Hb_000317_340

Information

Type -
Description -
Location Contig317: 237818-241944
Sequence    

Annotation

kegg
ID rcu:RCOM_1176810
description hypothetical protein
nr
ID XP_002518013.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80813
description Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
trembl
ID B9RW94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33394: 237842-241678 , PASA_asmbl_33395: 237848-241927 , PASA_asmbl_33396: 237854-241915
cDNA
(Sanger)
(ID:Location)		 012_H21.ab1: 238032-241915 , 018_H19.ab1: 238010-241915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032202_090 0.044973323 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
3 Hb_143629_230 0.0572230808 - - ring finger, putative [Ricinus communis]
4 Hb_000365_380 0.062672146 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000545_150 0.0655181189 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000465_060 0.0664557588 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
7 Hb_000120_750 0.067177466 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
8 Hb_001584_070 0.0688649813 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005997_010 0.0709049044 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
10 Hb_012515_010 0.0750697935 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_001383_060 0.0769899873 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_000340_140 0.0789543372 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
13 Hb_003927_130 0.0818775407 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
14 Hb_011781_030 0.0838627885 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
15 Hb_000086_550 0.084229975 - - Os02g0814700 [Oryza sativa Japonica Group]
16 Hb_002311_320 0.0843692665 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
17 Hb_171900_050 0.0848513561 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000087_020 0.0850732285 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
19 Hb_002685_190 0.0855391527 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
20 Hb_000086_070 0.0858763271 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000317_340 Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_143629_230 Hb_143629_230 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000545_150 Hb_000545_150 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_143629_230--Hb_000465_060 Hb_143629_230--Hb_000545_150 Hb_143629_230--Hb_000365_380 Hb_011781_030 Hb_011781_030 Hb_143629_230--Hb_011781_030 Hb_004595_020 Hb_004595_020 Hb_143629_230--Hb_004595_020 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_001584_070 Hb_001584_070 Hb_000365_380--Hb_001584_070 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_000365_380--Hb_032202_090 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000545_150--Hb_000465_060 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_000465_060--Hb_001584_070 Hb_012515_010 Hb_012515_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_001824_070 Hb_001824_070 Hb_000465_060--Hb_001824_070 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3226 4.0978 7.69428 11.4264 17.3779 30.0487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.7573 47.2516 19.4666 9.12468 8.24219

CAGE analysis