Hb_011781_030

Information

Type -
Description -
Location Contig11781: 64490-74711
Sequence    

Annotation

kegg
ID rcu:RCOM_1202600
description Frataxin, mitochondrial precursor, putative
nr
ID XP_002531340.1
description Frataxin, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9ZR07
description Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=1 SV=2
trembl
ID B9SZC1
description Frataxin, mitochondrial, putative OS=Ricinus communis GN=RCOM_1202600 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05390: 64648-74578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011781_030 0.0 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000483_410 0.0762151723 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
3 Hb_018133_060 0.0787094177 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
4 Hb_143629_230 0.079859335 - - ring finger, putative [Ricinus communis]
5 Hb_000840_030 0.081271808 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
6 Hb_000340_140 0.081299928 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
7 Hb_000317_340 0.0838627885 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001080_080 0.0841221576 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
9 Hb_005432_030 0.0875477894 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
10 Hb_000120_750 0.0878999028 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
11 Hb_000283_110 0.0883770473 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
12 Hb_033153_090 0.0899837401 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
13 Hb_000029_200 0.0910755957 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
14 Hb_002027_210 0.091232647 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_032202_090 0.0920215631 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
16 Hb_004108_230 0.0921064568 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
17 Hb_007416_020 0.0926129506 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
18 Hb_003581_100 0.093324854 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
19 Hb_000086_070 0.0935007041 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
20 Hb_002963_010 0.0937843791 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011781_030 Hb_011781_030 Hb_000483_410 Hb_000483_410 Hb_011781_030--Hb_000483_410 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_000317_340 Hb_000317_340 Hb_011781_030--Hb_000317_340 Hb_004317_040 Hb_004317_040 Hb_000483_410--Hb_004317_040 Hb_000877_020 Hb_000877_020 Hb_000483_410--Hb_000877_020 Hb_000680_140 Hb_000680_140 Hb_000483_410--Hb_000680_140 Hb_004108_230 Hb_004108_230 Hb_000483_410--Hb_004108_230 Hb_094608_010 Hb_094608_010 Hb_000483_410--Hb_094608_010 Hb_000444_050 Hb_000444_050 Hb_018133_060--Hb_000444_050 Hb_001604_080 Hb_001604_080 Hb_018133_060--Hb_001604_080 Hb_023732_070 Hb_023732_070 Hb_018133_060--Hb_023732_070 Hb_010180_020 Hb_010180_020 Hb_018133_060--Hb_010180_020 Hb_000086_070 Hb_000086_070 Hb_018133_060--Hb_000086_070 Hb_143629_230--Hb_000317_340 Hb_000465_060 Hb_000465_060 Hb_143629_230--Hb_000465_060 Hb_000545_150 Hb_000545_150 Hb_143629_230--Hb_000545_150 Hb_000365_380 Hb_000365_380 Hb_143629_230--Hb_000365_380 Hb_004595_020 Hb_004595_020 Hb_143629_230--Hb_004595_020 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_005539_350 Hb_005539_350 Hb_000840_030--Hb_005539_350 Hb_002874_190 Hb_002874_190 Hb_000840_030--Hb_002874_190 Hb_006541_030 Hb_006541_030 Hb_000840_030--Hb_006541_030 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_000365_380 Hb_000317_340--Hb_000545_150 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6743 10.2215 12.2296 14.3396 16.6214 36.5402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.816 68.2362 33.6279 12.8577 18.7717

CAGE analysis