Hb_000086_550

Information

Type -
Description -
Location Contig86: 463406-466002
Sequence    

Annotation

kegg
ID dosa:Os03t0139100-00
description Os03g0139100; Similar to Ribosomal Pr 117 (Fragment).
nr
ID NP_001048495.1
description Os02g0814700 [Oryza sativa Japonica Group]
swissprot
ID P49690
description 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3
trembl
ID A0A0E0NMR2
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0005739
description 60s ribosomal protein l23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60766: 463554-465628 , PASA_asmbl_60767: 464643-465036
cDNA
(Sanger)
(ID:Location)		 003_J09.ab1: 464031-465628 , 006_I23.ab1: 463947-465601 , 021_C01.ab1: 463947-465601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_550 0.0 - - Os02g0814700 [Oryza sativa Japonica Group]
2 Hb_005357_130 0.0522920866 - - hypothetical protein L484_012905 [Morus notabilis]
3 Hb_000340_140 0.0739433651 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
4 Hb_004032_100 0.0739690381 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
5 Hb_000364_020 0.0742223556 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
6 Hb_006816_530 0.074299751 - - 60S ribosomal protein L18, putative [Ricinus communis]
7 Hb_011161_050 0.0755408999 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
8 Hb_000024_030 0.0764625778 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
9 Hb_000505_140 0.0773946472 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
10 Hb_001421_060 0.0780200025 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
11 Hb_000283_110 0.0780633506 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
12 Hb_001505_020 0.0782153923 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
13 Hb_001433_050 0.0794156906 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_003623_050 0.0796008653 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009421_040 0.0798549528 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
16 Hb_012022_120 0.0799138776 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
17 Hb_009554_010 0.0828389461 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
18 Hb_000317_340 0.084229975 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006816_210 0.0843741523 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
20 Hb_005400_030 0.0844074427 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_550 Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_009421_040 Hb_009421_040 Hb_005357_130--Hb_009421_040 Hb_003623_050 Hb_003623_050 Hb_005357_130--Hb_003623_050 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010 Hb_006816_210 Hb_006816_210 Hb_005357_130--Hb_006816_210 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_000364_020--Hb_011161_050 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000364_020--Hb_000975_110 Hb_000364_020--Hb_000751_130 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.1988 28.86 36.9067 96.2587 86.5679 170.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
236.759 306.459 116.088 80.0407 58.2142

CAGE analysis