Hb_000199_070

Information

Type -
Description -
Location Contig199: 171234-171617
Sequence    

Annotation

kegg
ID rcu:RCOM_0655970
description hypothetical protein
nr
ID XP_002533441.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5C2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosomal l18p l5e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19964: 171028-171656
cDNA
(Sanger)
(ID:Location)		 017_I03.ab1: 171028-171383

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000199_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003058_220 0.0683585379 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
3 Hb_011161_050 0.0721654893 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
4 Hb_002701_050 0.0754938957 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
5 Hb_008847_020 0.0790717345 - - 40S ribosomal protein S17C [Hevea brasiliensis]
6 Hb_130291_010 0.0826830641 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
7 Hb_021409_090 0.0853093748 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
8 Hb_010812_010 0.090224313 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_009554_010 0.0933579628 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
10 Hb_005224_050 0.0949849452 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
11 Hb_000236_460 0.0964791356 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
12 Hb_187083_010 0.096746284 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
13 Hb_000184_050 0.0979701846 - - NOI, putative [Ricinus communis]
14 Hb_002539_090 0.0994854892 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
15 Hb_010172_030 0.0999777836 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
16 Hb_001433_050 0.1011236745 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000975_110 0.1013029353 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
18 Hb_000815_260 0.1020016297 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
19 Hb_000526_040 0.1030701678 - - 60S ribosomal protein L6, putative [Ricinus communis]
20 Hb_148930_010 0.1043674386 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]

Gene co-expression network

sample Hb_000199_070 Hb_000199_070 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_005224_050 Hb_005224_050 Hb_003058_220--Hb_005224_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_010883_150 Hb_010883_150 Hb_008847_020--Hb_010883_150 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_000526_150 Hb_000526_150 Hb_008847_020--Hb_000526_150 Hb_130291_010--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_130291_010--Hb_000975_110 Hb_002217_450 Hb_002217_450 Hb_021409_090--Hb_002217_450 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_021409_090--Hb_011161_050 Hb_021409_090--Hb_003561_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2605 6.86955 6.20271 21.7501 23.017 62.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.801 113.075 46.3225 21.687 5.58035

CAGE analysis