Hb_130291_010

Information

Type -
Description -
Location Contig130291: 4588-7108
Sequence    

Annotation

kegg
ID gmx:100806291
description protein PEROXIN-4-like
nr
ID XP_012077418.1
description PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
swissprot
ID Q8LGF7
description Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1
trembl
ID F8RWT3
description Protein binding/ubiquitin-protein ligase 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description protein peroxin-4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130291_010 0.0 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
2 Hb_000184_050 0.0763829676 - - NOI, putative [Ricinus communis]
3 Hb_012265_010 0.0773262418 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
4 Hb_001433_050 0.0811452974 - - 60S ribosomal protein L18, putative [Ricinus communis]
5 Hb_000024_030 0.0818884827 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
6 Hb_000199_070 0.0826830641 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000975_110 0.0855729601 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
8 Hb_000815_260 0.0878718407 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
9 Hb_011161_050 0.0911756016 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
10 Hb_000751_130 0.0911962694 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
11 Hb_000722_040 0.0913104837 - - -
12 Hb_008847_020 0.0915269264 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_002701_050 0.0915962247 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
14 Hb_010172_030 0.0924541476 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
15 Hb_148930_010 0.0929590901 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
16 Hb_003086_100 0.0971509517 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
17 Hb_000580_080 0.0983208302 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
18 Hb_001754_010 0.0986423702 - - translationally controlled tumor protein [Hevea brasiliensis]
19 Hb_003398_120 0.0989871007 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_001383_060 0.0997755004 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_130291_010 Hb_130291_010 Hb_000184_050 Hb_000184_050 Hb_130291_010--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_000815_260 Hb_000815_260 Hb_000184_050--Hb_000815_260 Hb_003683_040 Hb_003683_040 Hb_000184_050--Hb_003683_040 Hb_008847_020 Hb_008847_020 Hb_000184_050--Hb_008847_020 Hb_000196_050 Hb_000196_050 Hb_000184_050--Hb_000196_050 Hb_010883_150 Hb_010883_150 Hb_000184_050--Hb_010883_150 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_012265_010--Hb_001433_050 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_001433_050--Hb_148930_010 Hb_000024_030--Hb_000975_110 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_000199_070--Hb_008847_020 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.97129 1.43788 0.524069 2.3217 3.45899 7.08316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48365 11.9782 6.11324 3.82722 1.10111

CAGE analysis