Hb_010172_030

Information

Type -
Description -
Location Contig10172: 37807-45728
Sequence    

Annotation

kegg
ID cit:102627709
description mediator of RNA polymerase II transcription subunit 19a-like
nr
ID KDP38025.1
description hypothetical protein JCGZ_04668 [Jatropha curcas]
swissprot
ID Q6NQD9
description Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1
trembl
ID A0A067L0K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04668 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00803: 38290-45408 , PASA_asmbl_00804: 40214-40427 , PASA_asmbl_00805: 44642-45414 , PASA_asmbl_00806: 45232-45520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_030 0.0 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
2 Hb_002781_020 0.073585249 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
3 Hb_002214_050 0.0738044837 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
4 Hb_000212_260 0.074573529 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_002660_160 0.075600118 - - protein binding protein, putative [Ricinus communis]
6 Hb_000362_210 0.0774325258 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
7 Hb_000333_090 0.0864135466 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
8 Hb_011161_050 0.0869658459 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
9 Hb_012265_010 0.087619498 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
10 Hb_007021_020 0.0879480804 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
11 Hb_008847_020 0.0889240497 - - 40S ribosomal protein S17C [Hevea brasiliensis]
12 Hb_002571_020 0.0893611411 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
13 Hb_001123_120 0.0896896502 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
14 Hb_000069_100 0.0898841172 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010812_010 0.0899295836 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
16 Hb_001433_050 0.0906996903 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000722_040 0.09105793 - - -
18 Hb_003376_130 0.0923041064 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
19 Hb_130291_010 0.0924541476 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
20 Hb_003086_100 0.0936886844 - - hypothetical protein JCGZ_08729 [Jatropha curcas]

Gene co-expression network

sample Hb_010172_030 Hb_010172_030 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_002214_050--Hb_000333_090 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_002660_160--Hb_000362_210 Hb_007021_020 Hb_007021_020 Hb_002660_160--Hb_007021_020 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000362_210--Hb_000634_050 Hb_000333_090--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000333_090--Hb_000362_210 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1358 2.4055 2.42098 8.82295 12.7004 22.921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8275 47.0448 26.0035 8.69474 4.00606

CAGE analysis