Hb_000085_250

Information

Type -
Description -
Location Contig85: 199826-203476
Sequence    

Annotation

kegg
ID rcu:RCOM_0046150
description sodium/hydrogen exchanger, putative
nr
ID XP_002529026.1
description sodium/hydrogen exchanger, putative [Ricinus communis]
swissprot
ID Q8S397
description Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2
trembl
ID B9SSQ7
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_0046150 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60363: 200404-200639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_250 0.0 - - sodium/hydrogen exchanger, putative [Ricinus communis]
2 Hb_001584_300 0.0690748798 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
3 Hb_002660_160 0.0912099178 - - protein binding protein, putative [Ricinus communis]
4 Hb_002282_020 0.0944547068 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
5 Hb_002387_060 0.1022061399 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000032_220 0.1109877779 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
7 Hb_010172_030 0.1114920197 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
8 Hb_004410_010 0.1136944212 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
9 Hb_007021_020 0.1164206332 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
10 Hb_006132_060 0.1186675292 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
11 Hb_015934_020 0.118703171 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
12 Hb_000212_260 0.1193261833 - - acyl-carrier-protein [Triadica sebifera]
13 Hb_183963_020 0.1193451709 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
14 Hb_002352_010 0.1194067335 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
15 Hb_007047_010 0.1200701387 - - PREDICTED: expansin-A13 [Jatropha curcas]
16 Hb_002539_080 0.1207616575 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
17 Hb_000362_210 0.1208123327 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
18 Hb_001935_030 0.1213200793 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006831_030 0.1215423241 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
20 Hb_000567_170 0.1217213147 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_250 Hb_000085_250 Hb_001584_300 Hb_001584_300 Hb_000085_250--Hb_001584_300 Hb_002660_160 Hb_002660_160 Hb_000085_250--Hb_002660_160 Hb_002282_020 Hb_002282_020 Hb_000085_250--Hb_002282_020 Hb_002387_060 Hb_002387_060 Hb_000085_250--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_000085_250--Hb_000032_220 Hb_010172_030 Hb_010172_030 Hb_000085_250--Hb_010172_030 Hb_001584_300--Hb_002660_160 Hb_006132_060 Hb_006132_060 Hb_001584_300--Hb_006132_060 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_000345_030 Hb_000345_030 Hb_001584_300--Hb_000345_030 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_007021_020 Hb_007021_020 Hb_002660_160--Hb_007021_020 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_002527_070 Hb_002527_070 Hb_002282_020--Hb_002527_070 Hb_012522_030 Hb_012522_030 Hb_002282_020--Hb_012522_030 Hb_000861_040 Hb_000861_040 Hb_002282_020--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_002282_020--Hb_002326_030 Hb_002539_080 Hb_002539_080 Hb_002282_020--Hb_002539_080 Hb_024650_020 Hb_024650_020 Hb_002282_020--Hb_024650_020 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_000032_220--Hb_015934_020 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_000032_220--Hb_183963_020 Hb_000032_220--Hb_002352_010 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76496 0.0366886 0.299651 1.20756 2.43096 2.98608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94006 5.7634 5.09387 0.884284 0.244523

CAGE analysis