Hb_024650_020

Information

Type -
Description -
Location Contig24650: 36741-42941
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09880g
description POPTRDRAFT_417124; hypothetical protein
nr
ID XP_012087901.1
description PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
swissprot
ID Q8S4F6
description Sulfoquinovosyl transferase SQD2 OS=Arabidopsis thaliana GN=SQD2 PE=1 SV=1
trembl
ID B9HCK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09880g PE=4 SV=2
Gene Ontology
ID GO:0009941
description sulfoquinovosyldiacylglycerol 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25614: 37008-42703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024650_020 0.0 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
2 Hb_065500_050 0.0661654824 - - lipoate-protein ligase B, putative [Ricinus communis]
3 Hb_023386_080 0.0908974247 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
4 Hb_002447_030 0.0912762989 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
5 Hb_002282_020 0.0924594214 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
6 Hb_001427_120 0.0927922016 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
7 Hb_044662_070 0.0938461256 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
8 Hb_000956_010 0.094366785 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_002749_100 0.095824181 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
10 Hb_001711_030 0.0960708291 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
11 Hb_001191_100 0.096185131 - - F-actin capping protein beta subunit [Populus trichocarpa]
12 Hb_002527_070 0.0991248908 - - axonemal dynein light chain, putative [Ricinus communis]
13 Hb_002326_030 0.1020582375 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
14 Hb_000173_170 0.1026676338 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
15 Hb_000260_080 0.1054102465 - - thioredoxin H-type 1 [Hevea brasiliensis]
16 Hb_001366_230 0.1056985616 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000051_040 0.1073456568 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
18 Hb_011794_070 0.1075297416 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
19 Hb_012522_030 0.1075969836 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_004108_230 0.1078401604 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_024650_020 Hb_024650_020 Hb_065500_050 Hb_065500_050 Hb_024650_020--Hb_065500_050 Hb_023386_080 Hb_023386_080 Hb_024650_020--Hb_023386_080 Hb_002447_030 Hb_002447_030 Hb_024650_020--Hb_002447_030 Hb_002282_020 Hb_002282_020 Hb_024650_020--Hb_002282_020 Hb_001427_120 Hb_001427_120 Hb_024650_020--Hb_001427_120 Hb_044662_070 Hb_044662_070 Hb_024650_020--Hb_044662_070 Hb_000173_170 Hb_000173_170 Hb_065500_050--Hb_000173_170 Hb_001191_100 Hb_001191_100 Hb_065500_050--Hb_001191_100 Hb_003376_120 Hb_003376_120 Hb_065500_050--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_065500_050--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_065500_050--Hb_002326_030 Hb_002603_100 Hb_002603_100 Hb_023386_080--Hb_002603_100 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_000008_320 Hb_000008_320 Hb_002447_030--Hb_000008_320 Hb_000045_190 Hb_000045_190 Hb_002447_030--Hb_000045_190 Hb_000634_050 Hb_000634_050 Hb_002447_030--Hb_000634_050 Hb_001722_040 Hb_001722_040 Hb_002447_030--Hb_001722_040 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_002527_070 Hb_002527_070 Hb_002282_020--Hb_002527_070 Hb_012522_030 Hb_012522_030 Hb_002282_020--Hb_012522_030 Hb_002282_020--Hb_000861_040 Hb_002282_020--Hb_002326_030 Hb_002539_080 Hb_002539_080 Hb_002282_020--Hb_002539_080 Hb_001427_120--Hb_000956_010 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_044662_070--Hb_003376_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.2085 9.97072 31.672 15.6116 72.5387 85.6797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.839 126.016 117.9 14.9438 10.058

CAGE analysis