Hb_001191_100

Information

Type -
Description -
Location Contig1191: 107021-111785
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22130g
description POPTRDRAFT_831563; F-actin capping protein beta subunit
nr
ID XP_002306729.1
description F-actin capping protein beta subunit [Populus trichocarpa]
swissprot
ID Q9M9G7
description Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=1 SV=1
trembl
ID B9H7Y8
description F-actin capping protein beta subunit OS=Populus trichocarpa GN=POPTR_0005s22130g PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable f-actin-capping protein subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05648: 106945-111782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001191_100 0.0 - - F-actin capping protein beta subunit [Populus trichocarpa]
2 Hb_001366_230 0.0615995307 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000173_170 0.0773655214 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
4 Hb_000252_040 0.0810261588 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
5 Hb_065500_050 0.0885167214 - - lipoate-protein ligase B, putative [Ricinus communis]
6 Hb_000427_110 0.0889543584 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
7 Hb_001366_220 0.0899795807 - - conserved hypothetical protein [Ricinus communis]
8 Hb_183963_020 0.0919046058 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
9 Hb_006787_040 0.0927077594 - - polyadenylate-binding protein, putative [Ricinus communis]
10 Hb_000313_380 0.0929286892 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002326_030 0.0934188829 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
12 Hb_000072_280 0.0935686309 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
13 Hb_025087_010 0.0945990146 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
14 Hb_024650_020 0.096185131 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
15 Hb_008695_190 0.0979977472 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
16 Hb_007760_030 0.0983744867 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_000956_010 0.0987216301 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
18 Hb_005000_290 0.0998427812 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_026988_020 0.1010950921 - - outward rectifying K+ channel [Hevea brasiliensis]
20 Hb_000193_230 0.1032839699 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001191_100 Hb_001191_100 Hb_001366_230 Hb_001366_230 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_007760_030 Hb_007760_030 Hb_000173_170--Hb_007760_030 Hb_007152_020 Hb_007152_020 Hb_000173_170--Hb_007152_020 Hb_002326_030 Hb_002326_030 Hb_000173_170--Hb_002326_030 Hb_000173_170--Hb_065500_050 Hb_000956_010 Hb_000956_010 Hb_000173_170--Hb_000956_010 Hb_000252_040--Hb_001366_230 Hb_005000_290 Hb_005000_290 Hb_000252_040--Hb_005000_290 Hb_000252_040--Hb_183963_020 Hb_000291_200 Hb_000291_200 Hb_000252_040--Hb_000291_200 Hb_000787_070 Hb_000787_070 Hb_000252_040--Hb_000787_070 Hb_024650_020 Hb_024650_020 Hb_065500_050--Hb_024650_020 Hb_003376_120 Hb_003376_120 Hb_065500_050--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_065500_050--Hb_000861_040 Hb_065500_050--Hb_002326_030 Hb_002352_010 Hb_002352_010 Hb_000427_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_000427_110--Hb_001473_130 Hb_000427_110--Hb_002326_030 Hb_001606_070 Hb_001606_070 Hb_000427_110--Hb_001606_070 Hb_000427_110--Hb_026988_020 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.7869 5.92757 10.4185 7.54444 74.8357 76.348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.5408 93.4685 95.7375 10.7063 4.19359

CAGE analysis