Hb_001981_090

Information

Type -
Description -
Location Contig1981: 100761-104243
Sequence    

Annotation

kegg
ID pmum:103328908
description nucleolar GTP-binding protein 1-like
nr
ID XP_008229544.1
description PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
swissprot
ID Q9C6I8
description Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1
trembl
ID M5WL65
description Nucleolar GTP-binding protein 1 OS=Prunus persica GN=PRUPE_ppa002409mg PE=3 SV=1
Gene Ontology
ID GO:0005730
description nucleolar gtp-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19903: 100785-104163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_090 0.0 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
2 Hb_005357_150 0.0679106707 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001366_220 0.0768773559 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000809_040 0.0774859988 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
5 Hb_000983_100 0.0785584514 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
6 Hb_002357_040 0.0786877515 - - latex-abundant protein [Hevea brasiliensis]
7 Hb_000805_090 0.0789845001 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
8 Hb_008695_190 0.0812067142 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
9 Hb_000300_620 0.08272326 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
10 Hb_000861_040 0.0858347179 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
11 Hb_004882_020 0.0882565934 - - -
12 Hb_000173_170 0.0888375022 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_004108_050 0.0913308765 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
14 Hb_000387_080 0.0914739525 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
15 Hb_003057_120 0.0919547225 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_007229_060 0.0924202453 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
17 Hb_002326_030 0.0929510469 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
18 Hb_000110_160 0.0944594008 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000313_380 0.0947517393 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002025_320 0.09526566 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_001981_090 Hb_001981_090 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_002357_040 Hb_000809_040--Hb_000313_380 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_007229_060 Hb_007229_060 Hb_000983_100--Hb_007229_060 Hb_001473_130 Hb_001473_130 Hb_000983_100--Hb_001473_130 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_002025_320 Hb_002025_320 Hb_000983_100--Hb_002025_320 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_002527_070 Hb_002527_070 Hb_000983_100--Hb_002527_070 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_002357_040--Hb_000387_080 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.851 27.53 15.7856 13.7497 115.058 128.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
161.784 120.999 198.291 44.8107 13.3443

CAGE analysis