Hb_001366_220

Information

Type -
Description -
Location Contig1366: 170279-190180
Sequence    

Annotation

kegg
ID rcu:RCOM_1341920
description hypothetical protein
nr
ID XP_002515140.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DIR8
description Paladin OS=Xenopus tropicalis GN=pald1 PE=2 SV=1
trembl
ID B9RN01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341920 PE=4 SV=1
Gene Ontology
ID GO:0005829
description paladin-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10089: 170545-170626 , PASA_asmbl_10091: 170780-175284 , PASA_asmbl_10092: 175309-179504 , PASA_asmbl_10093: 189934-208696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000809_040 0.0672835266 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
3 Hb_000313_380 0.0754708373 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000387_080 0.0755613941 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
5 Hb_000085_310 0.0758855378 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
6 Hb_001981_090 0.0768773559 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
7 Hb_002357_040 0.0790016374 - - latex-abundant protein [Hevea brasiliensis]
8 Hb_002662_100 0.0826264402 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
9 Hb_001366_230 0.0840185518 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000983_100 0.0862385601 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
11 Hb_002025_320 0.0864016824 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
12 Hb_000771_140 0.0887439844 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
13 Hb_025087_010 0.089740501 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
14 Hb_003057_120 0.089750016 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_001191_100 0.0899795807 - - F-actin capping protein beta subunit [Populus trichocarpa]
16 Hb_026988_020 0.0903176506 - - outward rectifying K+ channel [Hevea brasiliensis]
17 Hb_006787_040 0.0907226547 - - polyadenylate-binding protein, putative [Ricinus communis]
18 Hb_008695_190 0.0934861869 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
19 Hb_011174_070 0.0935135604 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
20 Hb_000805_090 0.0943887031 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]

Gene co-expression network

sample Hb_001366_220 Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_000809_040--Hb_000313_380 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_001366_230 Hb_001366_230 Hb_000313_380--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_002357_040--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4457 6.14295 1.78484 3.98766 43.222 42.0938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.4126 40.0133 54.3178 10.7256 3.55704

CAGE analysis