Hb_009026_050

Information

Type -
Description -
Location Contig9026: 86189-90862
Sequence    

Annotation

kegg
ID rcu:RCOM_1381970
description vacuolar ATP synthase subunit f, putative (EC:3.6.3.14)
nr
ID ACL01095.1
description vacuolar ATPase F subunit [Hevea brasiliensis]
swissprot
ID Q9ZQX4
description V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1
trembl
ID B8Y6I1
description V-type proton ATPase subunit F OS=Hevea brasiliensis GN=VHA-F PE=2 SV=1
Gene Ontology
ID GO:0005794
description v-type proton atpase subunit f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61960: 86198-90673
cDNA
(Sanger)
(ID:Location)		 017_G08.ab1: 86200-90491 , 022_I24.ab1: 86203-90604 , 031_E09.ab1: 86203-90602 , 031_P24.ab1: 86200-90491 , 035_C07.ab1: 86200-90491 , 046_L17.ab1: 86200-90491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009026_050 0.0 - - vacuolar ATPase F subunit [Hevea brasiliensis]
2 Hb_000089_130 0.0742421997 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
3 Hb_025087_010 0.0754854236 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
4 Hb_001366_230 0.0820199285 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000313_380 0.0847296239 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002025_320 0.0899643425 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
7 Hb_183963_020 0.0914940977 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
8 Hb_000831_060 0.0938055922 - - 17.5 kd heat shock family protein [Populus trichocarpa]
9 Hb_001454_330 0.0940187858 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
10 Hb_001366_220 0.0947071082 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000809_040 0.0963144703 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
12 Hb_007229_060 0.0976364119 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
13 Hb_001804_040 0.0998597698 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000563_590 0.1006370359 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
15 Hb_000983_100 0.1034972269 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
16 Hb_001191_100 0.1039866006 - - F-actin capping protein beta subunit [Populus trichocarpa]
17 Hb_008695_190 0.1044769303 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
18 Hb_005000_290 0.1050713713 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_002662_100 0.1053475751 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
20 Hb_000376_050 0.1053920468 - - polyadenylate-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009026_050 Hb_009026_050 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_025087_010 Hb_025087_010 Hb_009026_050--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_001454_330 Hb_001454_330 Hb_000089_130--Hb_001454_330 Hb_000563_590 Hb_000563_590 Hb_000089_130--Hb_000563_590 Hb_011139_020 Hb_011139_020 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_025087_010--Hb_183963_020 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_001366_230--Hb_183963_020 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000809_040 Hb_000809_040 Hb_000313_380--Hb_000809_040 Hb_001366_220 Hb_001366_220 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_001473_130 Hb_001473_130 Hb_002025_320--Hb_001473_130 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_000983_100 Hb_000983_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001722_040 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
673.265 163.807 39.055 60.4114 619.033 760.799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
864.704 1005.54 751.899 203.745 21.8394

CAGE analysis