Hb_000809_040

Information

Type -
Description -
Location Contig809: 41099-47363
Sequence    

Annotation

kegg
ID rcu:RCOM_0602280
description Serine/threonine-protein kinase SAPK10, putative (EC:2.7.11.1)
nr
ID XP_002522330.1
description Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
swissprot
ID Q39193
description Serine/threonine-protein kinase SRK2I OS=Arabidopsis thaliana GN=SRK2I PE=1 SV=1
trembl
ID B9S8L1
description Serine/threonine-protein kinase SAPK10, putative OS=Ricinus communis GN=RCOM_0602280 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase srk2i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59136: 41649-47572 , PASA_asmbl_59137: 46862-47467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_040 0.0 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
2 Hb_001366_220 0.0672835266 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000313_380 0.0695910993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001981_090 0.0774859988 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
5 Hb_004882_020 0.0798003184 - - -
6 Hb_000085_310 0.0848329556 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
7 Hb_000771_140 0.0853006752 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
8 Hb_000805_090 0.0859225411 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
9 Hb_008695_190 0.089089534 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
10 Hb_001518_020 0.0930813832 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
11 Hb_003747_240 0.0961876574 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
12 Hb_009026_050 0.0963144703 - - vacuolar ATPase F subunit [Hevea brasiliensis]
13 Hb_000300_620 0.0979113261 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
14 Hb_021068_050 0.0980060106 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
15 Hb_002662_100 0.0984801351 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
16 Hb_000282_060 0.1008878274 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
17 Hb_002207_100 0.1015987105 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
18 Hb_000983_100 0.1022185574 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
19 Hb_002357_040 0.1024891817 - - latex-abundant protein [Hevea brasiliensis]
20 Hb_000072_280 0.1025056512 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000809_040 Hb_000809_040 Hb_001366_220 Hb_001366_220 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_001366_230 Hb_001366_230 Hb_000313_380--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_000085_310--Hb_005357_150 Hb_009510_030 Hb_009510_030 Hb_000771_140--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_000771_140--Hb_000057_060 Hb_005245_090 Hb_005245_090 Hb_000771_140--Hb_005245_090 Hb_026048_090 Hb_026048_090 Hb_000771_140--Hb_026048_090 Hb_001433_170 Hb_001433_170 Hb_000771_140--Hb_001433_170 Hb_000771_140--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
251.458 65.2236 8.23443 26.0856 247.27 207.385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.356 212.177 277.137 72.8725 14.3147

CAGE analysis