Hb_026048_090

Information

Type -
Description -
Location Contig26048: 114404-116790
Sequence    

Annotation

kegg
ID rcu:RCOM_1689400
description hypothetical protein
nr
ID XP_002509881.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUT9
description Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1
trembl
ID B9RCJ7
description Reticulon-like protein OS=Ricinus communis GN=RCOM_1689400 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27160: 114335-116774
cDNA
(Sanger)
(ID:Location)		 002_A14.ab1: 114420-116389 , 003_C18.ab1: 114420-116361 , 004_L14.ab1: 114420-116365 , 005_G16.ab1: 114420-116368 , 006_K08.ab1: 114424-116373 , 009_H24.ab1: 114423-116358 , 009_I08.ab1: 114415-115765 , 012_J17.ab1: 114423-116366 , 016_K12.ab1: 114423-115645 , 023_A11.ab1: 114404-115653 , 026_N05.ab1: 114423-115549 , 037_E21.ab1: 114423-116372 , 040_N10.ab1: 114423-116369 , 043_K06.ab1: 114415-116380 , 044_N01.ab1: 114420-116370 , 045_D05.ab1: 114420-116137 , 045_P24.ab1: 114420-116379 , 046_B15.ab1: 114423-116372 , 050_L16.ab1: 114424-115761 , 051_H08.ab1: 114424-116294 , 052_M17.ab1: 114420-116288 , 053_F18.ab1: 114420-116382 , 053_N20.ab1: 114423-116313

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026048_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009510_030 0.0647106954 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
3 Hb_127979_010 0.0732134547 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
4 Hb_000771_140 0.0735743162 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
5 Hb_000057_060 0.0745572275 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
6 Hb_001433_170 0.077392543 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_004126_010 0.0777657394 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_000085_340 0.080786492 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
9 Hb_000176_140 0.0808551048 - - PREDICTED: bystin [Jatropha curcas]
10 Hb_002067_160 0.0809689965 - - Protein MLO, putative [Ricinus communis]
11 Hb_002391_110 0.0863172948 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
12 Hb_098709_010 0.0872672592 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
13 Hb_000179_250 0.0873911646 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
14 Hb_000117_040 0.0887005163 - - 30S ribosomal protein S6A [Hevea brasiliensis]
15 Hb_000933_140 0.0907806173 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
16 Hb_005488_100 0.0914729348 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
17 Hb_002681_140 0.0918939639 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
18 Hb_005245_090 0.0926326408 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
19 Hb_011609_190 0.0933901464 - - 14-3-3 protein 2 [Hevea brasiliensis]
20 Hb_002942_030 0.0934458769 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]

Gene co-expression network

sample Hb_026048_090 Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_002506_010 Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_009510_030--Hb_003001_030 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_003404_030 Hb_003404_030 Hb_127979_010--Hb_003404_030 Hb_000771_140--Hb_000057_060 Hb_005245_090 Hb_005245_090 Hb_000771_140--Hb_005245_090 Hb_000771_140--Hb_001433_170 Hb_000387_080 Hb_000387_080 Hb_000771_140--Hb_000387_080 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_003404_030 Hb_000057_060--Hb_002506_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_001433_170--Hb_000176_140 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_004126_010--Hb_000057_060 Hb_004126_010--Hb_003001_030 Hb_004126_010--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2861.31 252.131 157.699 182.091 2603.05 3008.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2055.67 1622.44 1750.58 446.375 73.6259

CAGE analysis