Hb_002506_010

Information

Type -
Description -
Location Contig2506: 31565-35927
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13550g
description POPTRDRAFT_649242; choline transporter-related family protein
nr
ID XP_002313719.1
description choline transporter-related family protein [Populus trichocarpa]
swissprot
ID Q869R1
description CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1
trembl
ID B9HR78
description Choline transporter-related family protein OS=Populus trichocarpa GN=POPTR_0009s13550g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ctl-like protein ddb_g0288717

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26207: 31848-35701 , PASA_asmbl_26208: 34172-34420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002506_010 0.0 - - choline transporter-related family protein [Populus trichocarpa]
2 Hb_009510_030 0.0629390334 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
3 Hb_003404_030 0.0700286847 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000057_060 0.0725116588 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
5 Hb_001017_090 0.0752865651 - - -
6 Hb_010174_130 0.081049086 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
7 Hb_000387_080 0.0842352172 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
8 Hb_004126_010 0.0845997765 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
9 Hb_000771_140 0.0891518868 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
10 Hb_010931_100 0.0927419499 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
11 Hb_000264_190 0.0950894195 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
12 Hb_176022_020 0.0992946584 - - cytochrome P450, putative [Ricinus communis]
13 Hb_026048_090 0.0997701654 - - conserved hypothetical protein [Ricinus communis]
14 Hb_019613_020 0.1005696827 - - phospholipase C, putative [Ricinus communis]
15 Hb_001476_100 0.1013306614 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002067_160 0.1027225815 - - Protein MLO, putative [Ricinus communis]
17 Hb_005488_070 0.1038316344 - - putative cytochrome P450 [Oryza sativa Japonica Group]
18 Hb_027751_020 0.1075222764 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
19 Hb_005488_100 0.1077339234 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
20 Hb_127979_010 0.1078269231 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]

Gene co-expression network

sample Hb_002506_010 Hb_002506_010 Hb_009510_030 Hb_009510_030 Hb_002506_010--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_002506_010--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_002506_010--Hb_000057_060 Hb_001017_090 Hb_001017_090 Hb_002506_010--Hb_001017_090 Hb_010174_130 Hb_010174_130 Hb_002506_010--Hb_010174_130 Hb_000387_080 Hb_000387_080 Hb_002506_010--Hb_000387_080 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_009510_030--Hb_003001_030 Hb_003404_030--Hb_000057_060 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_003404_030--Hb_010174_130 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_000771_140 Hb_000057_060--Hb_127979_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
151.071 10.5787 7.47031 23.0335 165.891 172.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.443 68.0252 144.888 15.5739 8.6582

CAGE analysis