Hb_010931_100

Information

Type -
Description -
Location Contig10931: 87053-90335
Sequence    

Annotation

kegg
ID rcu:RCOM_1194860
description hypothetical protein
nr
ID XP_012077893.1
description PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13605 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02833: 87078-89854
cDNA
(Sanger)
(ID:Location)		 004_A22.ab1: 87132-87879 , 006_L22.ab1: 87128-87884 , 017_G01.ab1: 87125-87509 , 028_P16.ab1: 87128-87742 , 036_B05.ab1: 87127-87868 , 046_E22.ab1: 87127-87886 , 046_N13.ab1: 87122-87863 , 047_C22.ab1: 87128-87903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_100 0.0 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
2 Hb_000264_190 0.0510602117 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
3 Hb_002609_260 0.0592978232 - - CCCH-type zinc finger protein [Hevea brasiliensis]
4 Hb_004545_150 0.0673794161 - - PREDICTED: paramyosin [Jatropha curcas]
5 Hb_000563_540 0.0676754153 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
6 Hb_005488_100 0.0692018855 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
7 Hb_027751_020 0.0783026126 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
8 Hb_003906_110 0.0803957002 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
9 Hb_005730_020 0.0807222277 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
10 Hb_007178_010 0.0875607599 - - pseudo-hevein [Hevea brasiliensis]
11 Hb_009510_030 0.0882424561 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
12 Hb_004738_090 0.0893985772 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002232_180 0.0902922573 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
14 Hb_001017_090 0.0917769772 - - -
15 Hb_002506_010 0.0927419499 - - choline transporter-related family protein [Populus trichocarpa]
16 Hb_004126_010 0.099517095 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
17 Hb_003906_120 0.0997739491 - - -
18 Hb_002890_220 0.1010680869 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
19 Hb_002067_160 0.1023145725 - - Protein MLO, putative [Ricinus communis]
20 Hb_000249_110 0.1040104351 - - hypothetical protein JCGZ_22462 [Jatropha curcas]

Gene co-expression network

sample Hb_010931_100 Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_010931_100--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_010931_100--Hb_002609_260 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_000563_540 Hb_000563_540 Hb_010931_100--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_010931_100--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_010931_100--Hb_027751_020 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_000563_540 Hb_005730_020 Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_004545_150--Hb_002609_260 Hb_002989_080 Hb_002989_080 Hb_004545_150--Hb_002989_080 Hb_004545_150--Hb_000264_190 Hb_004545_150--Hb_005488_100 Hb_004545_150--Hb_000563_540 Hb_000563_540--Hb_027751_020 Hb_000563_540--Hb_005730_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070 Hb_002067_160 Hb_002067_160 Hb_005488_100--Hb_002067_160 Hb_007178_010 Hb_007178_010 Hb_005488_100--Hb_007178_010 Hb_005488_100--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_005488_100--Hb_002232_180 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_027751_020--Hb_000571_070 Hb_027751_020--Hb_000264_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
919.239 22.0498 9.15134 46.2441 725.109 757.844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
667.921 311.407 656.825 54.0761 12.8169

CAGE analysis