Hb_000264_190

Information

Type -
Description -
Location Contig264: 159974-162806
Sequence    

Annotation

kegg
ID rcu:RCOM_0935980
description sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative
nr
ID XP_002519043.1
description sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
swissprot
ID Q9ZPH4
description Sphingolipid delta(4)-desaturase DES1-like OS=Arabidopsis thaliana GN=At4g04930 PE=2 SV=1
trembl
ID B9RZ74
description Sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative OS=Ricinus communis GN=RCOM_0935980 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphingolipid delta -desaturase des1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27604: 160061-162839 , PASA_asmbl_27605: 160417-160732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_190 0.0 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
2 Hb_002609_260 0.0485605845 - - CCCH-type zinc finger protein [Hevea brasiliensis]
3 Hb_010931_100 0.0510602117 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_000563_540 0.0659546022 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
5 Hb_005730_020 0.0724643095 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
6 Hb_009510_030 0.0822942366 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
7 Hb_002890_220 0.0824186488 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
8 Hb_005488_100 0.0845579389 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
9 Hb_027751_020 0.0866957607 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
10 Hb_004738_090 0.0871542976 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004545_150 0.0929227741 - - PREDICTED: paramyosin [Jatropha curcas]
12 Hb_001017_090 0.0933643463 - - -
13 Hb_002506_010 0.0950894195 - - choline transporter-related family protein [Populus trichocarpa]
14 Hb_000771_140 0.0975408801 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
15 Hb_003001_030 0.0979806654 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
16 Hb_026048_090 0.0987966407 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000571_070 0.0989232062 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
18 Hb_002232_180 0.0990322659 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
19 Hb_000387_080 0.1025177785 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
20 Hb_017134_040 0.1026489245 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]

Gene co-expression network

sample Hb_000264_190 Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000264_190--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_000264_190--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_000264_190--Hb_000563_540 Hb_005730_020 Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_000563_540--Hb_027751_020 Hb_000563_540--Hb_005730_020 Hb_000571_070 Hb_000571_070 Hb_000563_540--Hb_000571_070 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_005730_020--Hb_010931_100 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_002506_010 Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_009510_030--Hb_000057_060 Hb_009510_030--Hb_003001_030 Hb_002374_340 Hb_002374_340 Hb_002890_220--Hb_002374_340 Hb_017134_040 Hb_017134_040 Hb_002890_220--Hb_017134_040 Hb_002890_220--Hb_002609_260 Hb_002890_220--Hb_010931_100 Hb_002890_220--Hb_005730_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
546.637 15.4057 16.2075 24.3371 441.622 428.915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
440.096 257.73 416.107 40.4767 6.3318

CAGE analysis