Hb_017134_040

Information

Type -
Description -
Location Contig17134: 26624-33723
Sequence    

Annotation

kegg
ID tcc:TCM_026326
description Pathogenesis-related protein P2 isoform 1
nr
ID KFK37886.1
description hypothetical protein AALP_AA3G042000 [Arabis alpina]
swissprot
ID P28814
description Barwin OS=Hordeum vulgare PE=1 SV=1
trembl
ID A0A087H6Y4
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G042000 PE=4 SV=1
Gene Ontology
ID GO:0008061
description wound-induced protein win2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16032: 32529-33721
cDNA
(Sanger)
(ID:Location)		 012_N06.ab1: 32776-33466 , 017_I01.ab1: 33052-33209 , 020_O01.ab1: 32618-33466 , 027_L06.ab1: 32904-33652 , 030_A01.ab1: 32797-33472 , 030_M01.ab1: 33232-33721 , 036_D22.ab1: 32643-33472 , 042_C04.ab1: 32898-33721 , 045_E08.ab1: 32652-33468 , 047_E03.ab1: 33067-33721 , 051_F24.ab1: 32594-33489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017134_040 0.0 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
2 Hb_005730_020 0.0874901729 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
3 Hb_002890_220 0.089948357 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
4 Hb_000329_610 0.093239871 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007178_010 0.0937976948 - - pseudo-hevein [Hevea brasiliensis]
6 Hb_005063_010 0.0949123008 - - HEV1.1 [Hevea brasiliensis]
7 Hb_003786_110 0.0955875686 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
8 Hb_009510_030 0.0973839924 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
9 Hb_002200_110 0.10013167 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002232_180 0.1005039273 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
11 Hb_000563_540 0.1016017135 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
12 Hb_002374_340 0.1023840088 - - Two-component response regulator ARR9, putative [Ricinus communis]
13 Hb_000264_190 0.1026489245 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
14 Hb_002609_260 0.1028153463 - - CCCH-type zinc finger protein [Hevea brasiliensis]
15 Hb_026048_090 0.1031925702 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005488_100 0.1071736659 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
17 Hb_007317_220 0.1089341876 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
18 Hb_003627_020 0.1098837588 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
19 Hb_009662_030 0.1107058035 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
20 Hb_000933_140 0.1119326212 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]

Gene co-expression network

sample Hb_017134_040 Hb_017134_040 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_002890_220 Hb_002890_220 Hb_017134_040--Hb_002890_220 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_002609_260 Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_009510_030 Hb_009510_030 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540 Hb_002374_340 Hb_002374_340 Hb_002890_220--Hb_002374_340 Hb_002890_220--Hb_000264_190 Hb_002890_220--Hb_002609_260 Hb_002890_220--Hb_010931_100 Hb_002890_220--Hb_005730_020 Hb_000329_610--Hb_003786_110 Hb_000853_370 Hb_000853_370 Hb_000329_610--Hb_000853_370 Hb_001504_170 Hb_001504_170 Hb_000329_610--Hb_001504_170 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020 Hb_002232_180 Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_007178_010--Hb_010931_100 Hb_186982_030 Hb_186982_030 Hb_005063_010--Hb_186982_030 Hb_005063_010--Hb_000329_610 Hb_026048_090 Hb_026048_090 Hb_005063_010--Hb_026048_090 Hb_002038_060 Hb_002038_060 Hb_005063_010--Hb_002038_060 Hb_003627_020 Hb_003627_020 Hb_005063_010--Hb_003627_020 Hb_003786_110--Hb_001504_170 Hb_003786_110--Hb_007178_010 Hb_003786_110--Hb_026048_090 Hb_003786_110--Hb_002067_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
784.538 11.8253 6.69304 51.1733 1010.02 814.523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
655.352 566.401 534.205 109.293 16.4509

CAGE analysis