Hb_180992_010

Information

Type -
Description -
Location Contig180992: 17110-21741
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24060g
description POPTRDRAFT_770847; hypothetical protein
nr
ID XP_002316518.2
description hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID B9HW12
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24060g PE=4 SV=2
Gene Ontology
ID GO:0043078
description transcriptional activator demeter isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180992_010 0.0 - - hypothetical protein POPTR_0010s24060g [Populus trichocarpa]
2 Hb_000329_610 0.1166065035 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001220_040 0.128765846 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
4 Hb_000933_140 0.1295030259 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
5 Hb_005348_080 0.1304167257 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
6 Hb_004295_020 0.1305053244 - - thioredoxin II-type 1 [Hevea brasiliensis]
7 Hb_000061_160 0.131220105 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
8 Hb_000252_040 0.1330109945 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
9 Hb_052135_030 0.1353547891 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
10 Hb_073973_110 0.1373242996 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
11 Hb_001191_100 0.1386303539 - - F-actin capping protein beta subunit [Populus trichocarpa]
12 Hb_001104_120 0.1391817343 - - -
13 Hb_001804_040 0.1398885706 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003786_110 0.1439423699 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
15 Hb_007451_030 0.1449217668 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
16 Hb_000369_090 0.1455724307 - - -
17 Hb_017134_040 0.1461420727 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
18 Hb_007317_220 0.1475144193 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
19 Hb_000330_170 0.1479122398 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
20 Hb_008016_010 0.1482216293 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_180992_010 Hb_180992_010 Hb_000329_610 Hb_000329_610 Hb_180992_010--Hb_000329_610 Hb_001220_040 Hb_001220_040 Hb_180992_010--Hb_001220_040 Hb_000933_140 Hb_000933_140 Hb_180992_010--Hb_000933_140 Hb_005348_080 Hb_005348_080 Hb_180992_010--Hb_005348_080 Hb_004295_020 Hb_004295_020 Hb_180992_010--Hb_004295_020 Hb_000061_160 Hb_000061_160 Hb_180992_010--Hb_000061_160 Hb_003786_110 Hb_003786_110 Hb_000329_610--Hb_003786_110 Hb_017134_040 Hb_017134_040 Hb_000329_610--Hb_017134_040 Hb_000853_370 Hb_000853_370 Hb_000329_610--Hb_000853_370 Hb_001504_170 Hb_001504_170 Hb_000329_610--Hb_001504_170 Hb_003507_020 Hb_003507_020 Hb_000329_610--Hb_003507_020 Hb_006452_060 Hb_006452_060 Hb_001220_040--Hb_006452_060 Hb_001220_040--Hb_005348_080 Hb_000085_310 Hb_000085_310 Hb_001220_040--Hb_000085_310 Hb_000340_430 Hb_000340_430 Hb_001220_040--Hb_000340_430 Hb_002662_100 Hb_002662_100 Hb_001220_040--Hb_002662_100 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_001437_040 Hb_001437_040 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_002518_250 Hb_002518_250 Hb_000933_140--Hb_002518_250 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_000831_060 Hb_000831_060 Hb_005348_080--Hb_000831_060 Hb_005348_080--Hb_008016_010 Hb_000291_200 Hb_000291_200 Hb_005348_080--Hb_000291_200 Hb_073973_110 Hb_073973_110 Hb_005348_080--Hb_073973_110 Hb_001804_040 Hb_001804_040 Hb_005348_080--Hb_001804_040 Hb_005348_080--Hb_098709_010 Hb_004295_020--Hb_007992_030 Hb_000847_070 Hb_000847_070 Hb_004295_020--Hb_000847_070 Hb_004223_230 Hb_004223_230 Hb_004295_020--Hb_004223_230 Hb_000045_130 Hb_000045_130 Hb_004295_020--Hb_000045_130 Hb_052135_030 Hb_052135_030 Hb_004295_020--Hb_052135_030 Hb_017170_020 Hb_017170_020 Hb_004295_020--Hb_017170_020 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000777_060 Hb_000777_060 Hb_000061_160--Hb_000777_060 Hb_001621_180 Hb_001621_180 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000330_170 Hb_000330_170 Hb_000061_160--Hb_000330_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17426 0.210504 1.85475 0.438436 13.5888 12.6312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17419 14.5308 7.65842 1.35464 0.103661

CAGE analysis