Hb_000777_060

Information

Type -
Description -
Location Contig777: 42851-43717
Sequence    

Annotation

kegg
ID rcu:RCOM_0826500
description hypothetical protein
nr
ID XP_002529370.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZP41
description EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1
trembl
ID B9STQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0826500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57859: 42805-43711
cDNA
(Sanger)
(ID:Location)		 013_G24.ab1: 42873-43640 , 020_M16.ab1: 42848-43711 , 021_B06.ab1: 42889-43671 , 026_E20.ab1: 42848-43693 , 029_J21.ab1: 42807-43616 , 032_B04.ab1: 42809-43711 , 033_C04.ab1: 42809-43710 , 042_D16.ab1: 42848-43712 , 049_O23.ab1: 42848-43683 , 051_B12.ab1: 42848-43711

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000777_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000061_160 0.0937676679 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
3 Hb_001621_180 0.1245584959 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
4 Hb_000330_170 0.1325518316 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
5 Hb_002200_120 0.1360228302 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007441_180 0.1400848174 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001252_140 0.1413321391 - - catalytic, putative [Ricinus communis]
8 Hb_001104_120 0.1428752489 - - -
9 Hb_000369_090 0.1493734661 - - -
10 Hb_007477_090 0.1494923511 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
11 Hb_005276_100 0.1509196269 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
12 Hb_000563_590 0.1547354808 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
13 Hb_000032_260 0.1559929311 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
14 Hb_151930_020 0.1569183685 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
15 Hb_000853_360 0.1586293687 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
16 Hb_000106_090 0.1596349094 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
17 Hb_000599_090 0.1622315915 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
18 Hb_006132_050 0.1656225763 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
19 Hb_000012_450 0.1661947309 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
20 Hb_034585_040 0.166709103 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]

Gene co-expression network

sample Hb_000777_060 Hb_000777_060 Hb_000061_160 Hb_000061_160 Hb_000777_060--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_000777_060--Hb_001621_180 Hb_000330_170 Hb_000330_170 Hb_000777_060--Hb_000330_170 Hb_002200_120 Hb_002200_120 Hb_000777_060--Hb_002200_120 Hb_007441_180 Hb_007441_180 Hb_000777_060--Hb_007441_180 Hb_001252_140 Hb_001252_140 Hb_000777_060--Hb_001252_140 Hb_001104_120 Hb_001104_120 Hb_000061_160--Hb_001104_120 Hb_000061_160--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000061_160--Hb_000330_170 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_007441_180 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_000603_220 Hb_000603_220 Hb_000330_170--Hb_000603_220 Hb_000330_170--Hb_002200_120 Hb_033448_010 Hb_033448_010 Hb_000330_170--Hb_033448_010 Hb_000369_090 Hb_000369_090 Hb_000330_170--Hb_000369_090 Hb_000184_120 Hb_000184_120 Hb_002200_120--Hb_000184_120 Hb_000563_530 Hb_000563_530 Hb_002200_120--Hb_000563_530 Hb_002200_120--Hb_033448_010 Hb_002200_120--Hb_000369_090 Hb_002200_120--Hb_000061_160 Hb_007441_180--Hb_001104_120 Hb_007441_180--Hb_000563_590 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_004410_010 Hb_004410_010 Hb_001252_140--Hb_004410_010 Hb_007747_130 Hb_007747_130 Hb_001252_140--Hb_007747_130 Hb_006469_060 Hb_006469_060 Hb_001252_140--Hb_006469_060 Hb_001252_140--Hb_001104_120 Hb_034585_040 Hb_034585_040 Hb_001252_140--Hb_034585_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
204.765 3.75816 1.23984 12.8738 375.293 330.254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
347.759 863.319 243.237 63.011 10.0835

CAGE analysis