Hb_005615_070

Information

Type -
Description -
Location Contig5615: 90190-92050
Sequence    

Annotation

kegg
ID tcc:TCM_029778
description RAB GTPase A1F
nr
ID AGL52582.1
description Rab7 [Hevea brasiliensis]
swissprot
ID Q9FJH0
description Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1
trembl
ID A0A023HJ75
description Rab7 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein raba1f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48807: 90289-91861
cDNA
(Sanger)
(ID:Location)		 044_L03.ab1: 90307-91641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005615_070 0.0 - - Rab7 [Hevea brasiliensis]
2 Hb_001621_180 0.0960089915 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
3 Hb_000143_050 0.0985073759 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
4 Hb_004297_040 0.1129956112 - - acyl CoA reductase [Hevea brasiliensis]
5 Hb_000032_260 0.1152299472 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
6 Hb_002291_030 0.1183022718 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
7 Hb_000085_300 0.1184841064 - - -
8 Hb_006469_060 0.1190033238 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
9 Hb_005276_100 0.1212974636 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
10 Hb_008066_040 0.1229836872 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
11 Hb_001252_140 0.1235318731 - - catalytic, putative [Ricinus communis]
12 Hb_183963_020 0.1258662105 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
13 Hb_001198_030 0.1271737826 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
14 Hb_000111_280 0.1287763222 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
15 Hb_002387_060 0.1351451666 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000599_090 0.1359210011 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
17 Hb_015934_020 0.1375285533 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_000544_110 0.1381357727 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_000062_580 0.1383856466 - - ATP binding protein, putative [Ricinus communis]
20 Hb_003581_090 0.1384674806 - - PREDICTED: galactose oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_005615_070 Hb_005615_070 Hb_001621_180 Hb_001621_180 Hb_005615_070--Hb_001621_180 Hb_000143_050 Hb_000143_050 Hb_005615_070--Hb_000143_050 Hb_004297_040 Hb_004297_040 Hb_005615_070--Hb_004297_040 Hb_000032_260 Hb_000032_260 Hb_005615_070--Hb_000032_260 Hb_002291_030 Hb_002291_030 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_001104_120 Hb_001104_120 Hb_001621_180--Hb_001104_120 Hb_030765_020 Hb_030765_020 Hb_000143_050--Hb_030765_020 Hb_005276_100 Hb_005276_100 Hb_000143_050--Hb_005276_100 Hb_000143_050--Hb_000032_260 Hb_001722_040 Hb_001722_040 Hb_000143_050--Hb_001722_040 Hb_183963_020 Hb_183963_020 Hb_000143_050--Hb_183963_020 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_005867_040 Hb_005867_040 Hb_000032_260--Hb_005867_040 Hb_000032_260--Hb_001621_180 Hb_000061_160 Hb_000061_160 Hb_000032_260--Hb_000061_160 Hb_000032_260--Hb_005276_100 Hb_000032_260--Hb_183963_020 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002387_060 Hb_002387_060 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020 Hb_000085_300--Hb_183963_020 Hb_000085_300--Hb_002387_060 Hb_025087_010 Hb_025087_010 Hb_000085_300--Hb_025087_010 Hb_000032_220 Hb_000032_220 Hb_000085_300--Hb_000032_220 Hb_007021_020 Hb_007021_020 Hb_000085_300--Hb_007021_020 Hb_000085_300--Hb_001722_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.086 4.38536 4.93445 9.07689 71.1515 58.1404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
164.073 249.424 137.255 13.2413 3.10852

CAGE analysis