Hb_005867_040

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig5867: 27863-29135
Sequence    

Annotation

kegg
ID rcu:RCOM_1241280
description transcription factor, putative
nr
ID XP_012086468.1
description PREDICTED: protein RKD4 [Jatropha curcas]
swissprot
ID Q9LVU8
description Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1
trembl
ID A0A067JSK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23923 PE=4 SV=1
Gene Ontology
ID GO:0003700
description protein rkd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005867_040 0.0 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
2 Hb_000032_260 0.0974889308 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
3 Hb_031403_010 0.1276582539 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
4 Hb_000085_300 0.1302879619 - - -
5 Hb_005276_100 0.1354050329 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
6 Hb_000340_430 0.1402539042 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003751_120 0.1402733215 - - -
8 Hb_000107_650 0.1414280275 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
9 Hb_030765_020 0.1426316337 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000143_050 0.1426964876 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
11 Hb_009026_050 0.1429949073 - - vacuolar ATPase F subunit [Hevea brasiliensis]
12 Hb_000061_160 0.1456219043 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
13 Hb_001478_050 0.1456479459 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_029223_030 0.147489195 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
15 Hb_000123_110 0.1479970458 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
16 Hb_005000_290 0.1481843508 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
17 Hb_183963_020 0.148760265 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
18 Hb_004453_140 0.1496098568 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
19 Hb_002835_170 0.1539132687 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
20 Hb_001102_010 0.1556167837 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]

Gene co-expression network

sample Hb_005867_040 Hb_005867_040 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_031403_010 Hb_031403_010 Hb_005867_040--Hb_031403_010 Hb_000085_300 Hb_000085_300 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_000340_430 Hb_000340_430 Hb_005867_040--Hb_000340_430 Hb_003751_120 Hb_003751_120 Hb_005867_040--Hb_003751_120 Hb_000143_050 Hb_000143_050 Hb_000032_260--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_000032_260--Hb_001621_180 Hb_000061_160 Hb_000061_160 Hb_000032_260--Hb_000061_160 Hb_000032_260--Hb_005276_100 Hb_183963_020 Hb_183963_020 Hb_000032_260--Hb_183963_020 Hb_031403_010--Hb_003751_120 Hb_000304_020 Hb_000304_020 Hb_031403_010--Hb_000304_020 Hb_001514_190 Hb_001514_190 Hb_031403_010--Hb_001514_190 Hb_009026_050 Hb_009026_050 Hb_031403_010--Hb_009026_050 Hb_000809_040 Hb_000809_040 Hb_031403_010--Hb_000809_040 Hb_000085_300--Hb_183963_020 Hb_002387_060 Hb_002387_060 Hb_000085_300--Hb_002387_060 Hb_025087_010 Hb_025087_010 Hb_000085_300--Hb_025087_010 Hb_000032_220 Hb_000032_220 Hb_000085_300--Hb_000032_220 Hb_007021_020 Hb_007021_020 Hb_000085_300--Hb_007021_020 Hb_001722_040 Hb_001722_040 Hb_000085_300--Hb_001722_040 Hb_005276_100--Hb_000143_050 Hb_000580_160 Hb_000580_160 Hb_005276_100--Hb_000580_160 Hb_005276_100--Hb_000061_160 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_001488_100 Hb_001488_100 Hb_000340_430--Hb_001488_100 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_003751_120--Hb_000304_020 Hb_030765_020 Hb_030765_020 Hb_003751_120--Hb_030765_020 Hb_005618_040 Hb_005618_040 Hb_003751_120--Hb_005618_040 Hb_003751_120--Hb_025087_010 Hb_003751_120--Hb_000085_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.37203 0.0319711 0 0 0.249717 0.269726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363995 0.572372 0.4119 0.116076 0

CAGE analysis