Hb_001514_190

Information

Type -
Description -
Location Contig1514: 181545-182134
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_190 0.0 - - -
2 Hb_000123_110 0.1008835853 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
3 Hb_001930_070 0.1165350904 - - -
4 Hb_006499_010 0.121459216 - - -
5 Hb_031403_010 0.1266482272 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
6 Hb_007245_090 0.1274720545 - - -
7 Hb_000014_100 0.1452302813 - - -
8 Hb_001186_060 0.1463609158 - - -
9 Hb_004882_020 0.1542783558 - - -
10 Hb_000163_290 0.1549625955 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
11 Hb_005214_110 0.1594680955 - - -
12 Hb_000339_070 0.1632394209 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
13 Hb_002849_210 0.1644740504 - - protein binding protein, putative [Ricinus communis]
14 Hb_000809_040 0.1666708517 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
15 Hb_001518_020 0.1676223262 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
16 Hb_003751_120 0.1682070911 - - -
17 Hb_005867_040 0.1684394434 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
18 Hb_000567_200 0.1713703135 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
19 Hb_000300_620 0.1723315589 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
20 Hb_003747_240 0.1733304656 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001514_190 Hb_001514_190 Hb_000123_110 Hb_000123_110 Hb_001514_190--Hb_000123_110 Hb_001930_070 Hb_001930_070 Hb_001514_190--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_001514_190--Hb_006499_010 Hb_031403_010 Hb_031403_010 Hb_001514_190--Hb_031403_010 Hb_007245_090 Hb_007245_090 Hb_001514_190--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_001514_190--Hb_000014_100 Hb_000123_110--Hb_006499_010 Hb_005867_040 Hb_005867_040 Hb_000123_110--Hb_005867_040 Hb_004522_040 Hb_004522_040 Hb_000123_110--Hb_004522_040 Hb_002849_210 Hb_002849_210 Hb_000123_110--Hb_002849_210 Hb_000123_110--Hb_031403_010 Hb_001930_070--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_001930_070--Hb_001186_060 Hb_001930_070--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_001930_070--Hb_000014_100 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_003751_120 Hb_003751_120 Hb_031403_010--Hb_003751_120 Hb_000304_020 Hb_000304_020 Hb_031403_010--Hb_000304_020 Hb_031403_010--Hb_005867_040 Hb_009026_050 Hb_009026_050 Hb_031403_010--Hb_009026_050 Hb_000809_040 Hb_000809_040 Hb_031403_010--Hb_000809_040 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96841 0.93054 0 0 3.28626 1.44022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89451 2.92357 3.29081 1.66808 0

CAGE analysis