Hb_002849_210

Information

Type -
Description -
Location Contig2849: 204133-207941
Sequence    

Annotation

kegg
ID rcu:RCOM_1616120
description protein binding protein, putative
nr
ID XP_002511886.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID B9RDU7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1616120 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29847: 205101-207611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_210 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001518_020 0.1091073334 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
3 Hb_000809_040 0.1143058633 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
4 Hb_009026_050 0.1157227517 - - vacuolar ATPase F subunit [Hevea brasiliensis]
5 Hb_000179_050 0.1218828672 - - 40S ribosomal protein S17A [Hevea brasiliensis]
6 Hb_000339_070 0.1258945045 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
7 Hb_000124_020 0.1295576967 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
8 Hb_000313_380 0.1308149605 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000056_100 0.1313029727 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
10 Hb_000856_340 0.1318333127 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
11 Hb_000805_090 0.1323207864 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
12 Hb_000983_100 0.1343489255 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
13 Hb_000116_470 0.1374318545 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_000622_310 0.1395981031 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
15 Hb_000300_620 0.1421338234 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
16 Hb_007229_060 0.1425534867 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
17 Hb_004882_020 0.1437452438 - - -
18 Hb_000156_100 0.1444083516 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
19 Hb_006189_010 0.1446820277 - - -
20 Hb_009382_020 0.144834634 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_210 Hb_002849_210 Hb_001518_020 Hb_001518_020 Hb_002849_210--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_002849_210--Hb_000809_040 Hb_009026_050 Hb_009026_050 Hb_002849_210--Hb_009026_050 Hb_000179_050 Hb_000179_050 Hb_002849_210--Hb_000179_050 Hb_000339_070 Hb_000339_070 Hb_002849_210--Hb_000339_070 Hb_000124_020 Hb_000124_020 Hb_002849_210--Hb_000124_020 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_001518_020--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_001518_020--Hb_000163_290 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_009382_020 Hb_009382_020 Hb_001518_020--Hb_009382_020 Hb_001366_220 Hb_001366_220 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_025087_010 Hb_025087_010 Hb_009026_050--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_009026_050--Hb_001366_230 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_006153_120 Hb_006153_120 Hb_000179_050--Hb_006153_120 Hb_001856_020 Hb_001856_020 Hb_000179_050--Hb_001856_020 Hb_007161_010 Hb_007161_010 Hb_000179_050--Hb_007161_010 Hb_000196_090 Hb_000196_090 Hb_000179_050--Hb_000196_090 Hb_005147_090 Hb_005147_090 Hb_000179_050--Hb_005147_090 Hb_007245_090 Hb_007245_090 Hb_000339_070--Hb_007245_090 Hb_005031_070 Hb_005031_070 Hb_000339_070--Hb_005031_070 Hb_005214_110 Hb_005214_110 Hb_000339_070--Hb_005214_110 Hb_004223_230 Hb_004223_230 Hb_000339_070--Hb_004223_230 Hb_000116_470 Hb_000116_470 Hb_000339_070--Hb_000116_470 Hb_000622_310 Hb_000622_310 Hb_000124_020--Hb_000622_310 Hb_000056_100 Hb_000056_100 Hb_000124_020--Hb_000056_100 Hb_010863_080 Hb_010863_080 Hb_000124_020--Hb_010863_080 Hb_000179_210 Hb_000179_210 Hb_000124_020--Hb_000179_210 Hb_000124_020--Hb_000116_470 Hb_000124_020--Hb_005147_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5193 6.09042 0.110459 1.81016 11.3488 13.7305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6387 16.1913 17.5863 5.32441 0

CAGE analysis