Hb_005147_090

Information

Type -
Description -
Location Contig5147: 103136-111281
Sequence    

Annotation

kegg
ID rcu:RCOM_0758190
description nucleic acid binding protein, putative
nr
ID XP_012066697.1
description PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
swissprot
ID Q8GWR3
description KH domain-containing protein At1g09660/At1g09670 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1
trembl
ID A0A067LD84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00257 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at1g09660 at1g09670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46478: 103188-111292 , PASA_asmbl_46479: 103188-111391 , PASA_asmbl_46480: 94268-103969 , PASA_asmbl_46481: 111049-111612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_090 0.0 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
2 Hb_001123_230 0.077646664 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
3 Hb_000457_150 0.0786740083 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
4 Hb_018790_060 0.0912853769 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
5 Hb_000297_200 0.0931815031 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
6 Hb_003750_080 0.0947201458 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
7 Hb_000200_340 0.0969742935 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_163145_020 0.0985366441 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
9 Hb_003151_050 0.1023588033 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
10 Hb_000237_080 0.1025928406 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
11 Hb_000554_020 0.1056700761 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
12 Hb_000935_050 0.1059162334 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
13 Hb_006949_050 0.1063746073 - - unknown [Lotus japonicus]
14 Hb_000124_020 0.1078767536 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
15 Hb_010710_040 0.1079895013 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000567_260 0.108138987 - - BnaA09g41440D [Brassica napus]
17 Hb_000997_400 0.1089848192 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
18 Hb_000406_220 0.1091442776 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
19 Hb_000179_210 0.1093635133 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
20 Hb_000754_060 0.1097679703 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005147_090 Hb_005147_090 Hb_001123_230 Hb_001123_230 Hb_005147_090--Hb_001123_230 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_018790_060 Hb_018790_060 Hb_005147_090--Hb_018790_060 Hb_000297_200 Hb_000297_200 Hb_005147_090--Hb_000297_200 Hb_003750_080 Hb_003750_080 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340 Hb_001123_230--Hb_018790_060 Hb_163145_020 Hb_163145_020 Hb_001123_230--Hb_163145_020 Hb_000997_400 Hb_000997_400 Hb_001123_230--Hb_000997_400 Hb_001123_230--Hb_000297_200 Hb_000061_420 Hb_000061_420 Hb_001123_230--Hb_000061_420 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_018790_060--Hb_000061_420 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_000297_200--Hb_000997_400 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_001671_020 Hb_001671_020 Hb_000200_340--Hb_001671_020 Hb_000186_240 Hb_000186_240 Hb_000200_340--Hb_000186_240 Hb_189003_080 Hb_189003_080 Hb_000200_340--Hb_189003_080 Hb_000200_340--Hb_000567_260 Hb_000200_340--Hb_000457_150 Hb_000200_340--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
153.327 152.448 28.5515 54.294 166.251 191.826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
201.087 192.844 326.233 91.2819 21.8444

CAGE analysis