Hb_000457_150

Information

Type -
Description -
Location Contig457: 182289-187478
Sequence    

Annotation

kegg
ID pmum:103330376
description transcription factor GTE8
nr
ID XP_012071037.1
description PREDICTED: transcription factor GTE8-like [Jatropha curcas]
swissprot
ID Q9LK27
description Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2
trembl
ID A0A067LNB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43466: 182305-187595 , PASA_asmbl_43467: 182305-187595 , PASA_asmbl_43468: 186416-187563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_150 0.0 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
2 Hb_005532_060 0.0675577974 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
3 Hb_178968_110 0.0696357449 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
4 Hb_000297_200 0.0713239311 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
5 Hb_055062_030 0.0744431739 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
6 Hb_000997_400 0.076884453 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
7 Hb_000567_260 0.0778441055 - - BnaA09g41440D [Brassica napus]
8 Hb_008453_090 0.0778555137 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
9 Hb_005147_090 0.0786740083 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
10 Hb_000179_210 0.078941437 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
11 Hb_000200_340 0.0791365709 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
12 Hb_000614_230 0.0800506189 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_001671_020 0.0810672532 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
14 Hb_000554_020 0.0831779007 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
15 Hb_008695_210 0.0838968213 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
16 Hb_006949_050 0.0850200053 - - unknown [Lotus japonicus]
17 Hb_010710_040 0.0854149142 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_189003_080 0.0857361907 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
19 Hb_000193_290 0.0863754149 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
20 Hb_000022_250 0.086875558 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]

Gene co-expression network

sample Hb_000457_150 Hb_000457_150 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_005532_060--Hb_178968_110 Hb_005532_060--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_178968_110--Hb_003266_130 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_000297_200--Hb_000997_400 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_055062_030--Hb_000567_260 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.7213 73.8607 23.256 25.8876 82.3787 111.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.86 125.867 188.835 41.2948 32.1978

CAGE analysis