Hb_010710_040

Information

Type -
Description -
Location Contig10710: 28223-29869
Sequence    

Annotation

kegg
ID rcu:RCOM_0734410
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002520533.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FGR2
description Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
trembl
ID B9S3G4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0734410 PE=4 SV=1
Gene Ontology
ID GO:0007062
description pentatricopeptide repeat-containing protein at5g59600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02255: 28779-28880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010710_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000997_400 0.0773014757 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
3 Hb_000836_070 0.0785986024 - - protein binding protein, putative [Ricinus communis]
4 Hb_003018_190 0.0853819246 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
5 Hb_000457_150 0.0854149142 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
6 Hb_000156_100 0.0878005378 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
7 Hb_006846_110 0.0902085285 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
8 Hb_000297_200 0.0907313439 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
9 Hb_131864_040 0.0931611968 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
10 Hb_000019_130 0.0944153787 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
11 Hb_000179_210 0.0946419869 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
12 Hb_006501_040 0.0977100733 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
13 Hb_000059_220 0.1004995268 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
14 Hb_005488_010 0.1037133763 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001226_020 0.1069338232 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
16 Hb_005147_090 0.1079895013 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
17 Hb_008453_090 0.1084869069 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
18 Hb_000200_050 0.1086824781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_005532_060 0.1097499643 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
20 Hb_006816_140 0.1097670246 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]

Gene co-expression network

sample Hb_010710_040 Hb_010710_040 Hb_000997_400 Hb_000997_400 Hb_010710_040--Hb_000997_400 Hb_000836_070 Hb_000836_070 Hb_010710_040--Hb_000836_070 Hb_003018_190 Hb_003018_190 Hb_010710_040--Hb_003018_190 Hb_000457_150 Hb_000457_150 Hb_010710_040--Hb_000457_150 Hb_000156_100 Hb_000156_100 Hb_010710_040--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_010710_040--Hb_006846_110 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000997_400--Hb_000457_150 Hb_005488_010 Hb_005488_010 Hb_000836_070--Hb_005488_010 Hb_004899_320 Hb_004899_320 Hb_000836_070--Hb_004899_320 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_000836_070--Hb_003018_190 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_003018_190--Hb_006846_110 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_002794_030 Hb_002794_030 Hb_000156_100--Hb_002794_030 Hb_000983_100 Hb_000983_100 Hb_000156_100--Hb_000983_100 Hb_000156_100--Hb_000836_070 Hb_007229_060 Hb_007229_060 Hb_000156_100--Hb_007229_060 Hb_006846_110--Hb_131864_040 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_006846_110--Hb_002603_160 Hb_006846_110--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.88235 4.22278 0.674437 1.59381 6.01339 10.8592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70703 9.69262 15.2754 2.83436 1.85444

CAGE analysis