Hb_002603_160

Information

Type -
Description -
Location Contig2603: 159547-164786
Sequence    

Annotation

kegg
ID rcu:RCOM_0593160
description Arginyl-tRNA--protein transferase, putative (EC:2.3.2.8)
nr
ID XP_002526898.1
description Arginyl-tRNA--protein transferase, putative [Ricinus communis]
swissprot
ID Q9ZT48
description Arginyl-tRNA--protein transferase 1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=2
trembl
ID B9SLM9
description Arginyl-tRNA--protein transferase OS=Ricinus communis GN=RCOM_0593160 PE=3 SV=1
Gene Ontology
ID GO:0005737
description arginyl-trna--protein transferase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_160 0.0 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
2 Hb_131864_040 0.0609920866 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
3 Hb_003018_190 0.0689576594 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
4 Hb_006846_110 0.0800071006 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
5 Hb_005188_090 0.0887366731 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
6 Hb_000223_150 0.0926627476 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
7 Hb_001141_280 0.0933650793 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
8 Hb_000997_400 0.0945013459 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
9 Hb_001158_140 0.0948879668 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
10 Hb_005488_010 0.0972999633 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006816_140 0.0978852261 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
12 Hb_016065_010 0.0996473221 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_000671_150 0.1006672099 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
14 Hb_003551_050 0.1012012453 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
15 Hb_001329_300 0.1021219312 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
16 Hb_001073_050 0.1025942249 - - -
17 Hb_154648_010 0.1028610908 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
18 Hb_005701_010 0.1036020242 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
19 Hb_000061_300 0.1036340298 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
20 Hb_007416_270 0.104027199 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_160 Hb_002603_160 Hb_131864_040 Hb_131864_040 Hb_002603_160--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_002603_160--Hb_003018_190 Hb_006846_110 Hb_006846_110 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_001141_280 Hb_001141_280 Hb_002603_160--Hb_001141_280 Hb_131864_040--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_131864_040--Hb_006846_110 Hb_005488_010 Hb_005488_010 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_003018_190--Hb_006846_110 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090 Hb_000172_560 Hb_000172_560 Hb_005188_090--Hb_000172_560 Hb_000236_140 Hb_000236_140 Hb_005188_090--Hb_000236_140 Hb_005043_010 Hb_005043_010 Hb_005188_090--Hb_005043_010 Hb_007416_270 Hb_007416_270 Hb_005188_090--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_005188_090--Hb_003687_100 Hb_000223_150--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_000223_150--Hb_008289_060 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_005532_060 Hb_005532_060 Hb_000223_150--Hb_005532_060 Hb_000223_150--Hb_131864_040 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001109_020 Hb_001109_020 Hb_001141_280--Hb_001109_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8786 8.74837 3.49383 8.07999 17.6176 28.953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.7984 34.6496 59.119 16.2299 10.5073

CAGE analysis