Hb_000172_560

Information

Type -
Description -
Location Contig172: 629458-637144
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06200g
description POPTRDRAFT_562662; pentatricopeptide repeat-containing family protein
nr
ID XP_012068436.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID B9HFU9
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0007s06200g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16193: 629219-630013 , PASA_asmbl_16194: 631674-631977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_560 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
2 Hb_005188_090 0.0844654659 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
3 Hb_000236_140 0.0920380998 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_007416_270 0.0980801075 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
5 Hb_000479_130 0.111756356 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
6 Hb_001189_050 0.1213768802 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
7 Hb_003687_100 0.1216343944 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
8 Hb_005043_010 0.1234494381 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_005686_030 0.1258035915 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
10 Hb_007075_050 0.1263205844 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002603_160 0.1275291618 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
12 Hb_001959_160 0.1294737173 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
13 Hb_000362_120 0.1315763304 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_001493_180 0.1321532443 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
15 Hb_000019_130 0.1342765035 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
16 Hb_004306_060 0.1355320211 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
17 Hb_004785_140 0.1366427568 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
18 Hb_000865_060 0.1369846974 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
19 Hb_002496_040 0.139672486 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
20 Hb_004128_180 0.1402617919 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_560 Hb_000172_560 Hb_005188_090 Hb_005188_090 Hb_000172_560--Hb_005188_090 Hb_000236_140 Hb_000236_140 Hb_000172_560--Hb_000236_140 Hb_007416_270 Hb_007416_270 Hb_000172_560--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000172_560--Hb_000479_130 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_003687_100 Hb_003687_100 Hb_000172_560--Hb_003687_100 Hb_002603_160 Hb_002603_160 Hb_005188_090--Hb_002603_160 Hb_005188_090--Hb_000236_140 Hb_005043_010 Hb_005043_010 Hb_005188_090--Hb_005043_010 Hb_005188_090--Hb_007416_270 Hb_005188_090--Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_007416_270 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_004306_060 Hb_004306_060 Hb_000479_130--Hb_004306_060 Hb_000934_270 Hb_000934_270 Hb_000479_130--Hb_000934_270 Hb_000479_130--Hb_007075_050 Hb_011030_020 Hb_011030_020 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001357_010 Hb_001357_010 Hb_001189_050--Hb_001357_010 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_003687_100--Hb_007075_050 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.807306 0.713349 0.200169 0.238582 0.988965 1.50548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22344 1.42833 4.91328 0.905739 0.754004

CAGE analysis