Hb_002496_040

Information

Type -
Description -
Location Contig2496: 38964-41096
Sequence    

Annotation

kegg
ID tcc:TCM_011604
description Pentatricopeptide repeat superfamily protein
nr
ID XP_012067731.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZQ74
description Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1
trembl
ID A0A067L9V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15672 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25957: 40018-40244 , PASA_asmbl_25958: 40273-40594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002496_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
2 Hb_003687_100 0.079860503 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
3 Hb_000362_120 0.0926613799 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_002205_190 0.0951375094 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
5 Hb_001266_060 0.0998938817 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
6 Hb_000343_130 0.1017396959 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
7 Hb_000635_220 0.1054899385 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
8 Hb_000206_240 0.107635183 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007483_100 0.1108055467 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
10 Hb_004452_010 0.1114972672 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
11 Hb_000002_050 0.1119749784 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
12 Hb_012325_020 0.1122269246 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
13 Hb_007747_200 0.1149796301 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
14 Hb_000236_140 0.1151846599 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
15 Hb_001454_190 0.1154198128 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
16 Hb_000427_050 0.1156081098 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_007075_050 0.1158106177 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000019_130 0.1163409638 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
19 Hb_016901_010 0.1172224186 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
20 Hb_000011_330 0.1172302834 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002496_040 Hb_002496_040 Hb_003687_100 Hb_003687_100 Hb_002496_040--Hb_003687_100 Hb_000362_120 Hb_000362_120 Hb_002496_040--Hb_000362_120 Hb_002205_190 Hb_002205_190 Hb_002496_040--Hb_002205_190 Hb_001266_060 Hb_001266_060 Hb_002496_040--Hb_001266_060 Hb_000343_130 Hb_000343_130 Hb_002496_040--Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_002496_040--Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_000236_140 Hb_000236_140 Hb_003687_100--Hb_000236_140 Hb_007075_050 Hb_007075_050 Hb_003687_100--Hb_007075_050 Hb_007416_270 Hb_007416_270 Hb_003687_100--Hb_007416_270 Hb_003687_100--Hb_000343_130 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_000362_120--Hb_007416_270 Hb_000011_330 Hb_000011_330 Hb_002205_190--Hb_000011_330 Hb_000567_380 Hb_000567_380 Hb_002205_190--Hb_000567_380 Hb_004785_140 Hb_004785_140 Hb_002205_190--Hb_004785_140 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001266_060--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_001266_060--Hb_000427_050 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_001266_060--Hb_003687_100 Hb_000343_130--Hb_000635_220 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_007747_200 Hb_007747_200 Hb_000343_130--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_000635_220--Hb_007747_200 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58255 1.62672 0.338599 0.517657 1.08295 1.70175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13497 1.50495 4.33506 1.61102 1.01542

CAGE analysis