Hb_001956_200

Information

Type -
Description -
Location Contig1956: 161672-172884
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25020g
description POPTRDRAFT_752121; pumilio/Puf RNA-binding domain-containing family protein
nr
ID XP_002299859.2
description pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9ZW06
description Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
trembl
ID B9GJ97
description Pumilio/Puf RNA-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s25020g PE=4 SV=2
Gene Ontology
ID GO:0003723
description pumilio homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19590: 162767-172457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_200 0.0 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
2 Hb_004452_010 0.0733648352 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
3 Hb_001266_060 0.07391159 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
4 Hb_008500_010 0.0817125235 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
5 Hb_001584_150 0.0826126769 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
6 Hb_000049_310 0.0838717731 - - Myosin-J heavy chain, partial [Glycine soja]
7 Hb_031042_020 0.0896394117 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
8 Hb_001975_160 0.0906926254 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_007757_110 0.0907555033 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
10 Hb_003020_050 0.0933476161 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001507_020 0.0937932754 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
12 Hb_000000_370 0.0946182824 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
13 Hb_000291_110 0.0946210373 - - eukaryotic translation initiation factor [Hevea brasiliensis]
14 Hb_002311_040 0.0968054071 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
15 Hb_120327_010 0.0969038666 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
16 Hb_006316_040 0.0984661569 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
17 Hb_000152_820 0.0989953419 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
18 Hb_010175_020 0.0996306091 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_089032_040 0.1005630618 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
20 Hb_000577_010 0.1007746576 - - hypothetical protein JCGZ_23887 [Jatropha curcas]

Gene co-expression network

sample Hb_001956_200 Hb_001956_200 Hb_004452_010 Hb_004452_010 Hb_001956_200--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_001956_200--Hb_001266_060 Hb_008500_010 Hb_008500_010 Hb_001956_200--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_031042_020 Hb_031042_020 Hb_001956_200--Hb_031042_020 Hb_004452_010--Hb_001266_060 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_004452_010--Hb_008500_010 Hb_000427_050 Hb_000427_050 Hb_004452_010--Hb_000427_050 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001266_060--Hb_000427_050 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_001584_150--Hb_002311_040 Hb_000009_320 Hb_000009_320 Hb_000049_310--Hb_000009_320 Hb_004907_110 Hb_004907_110 Hb_000049_310--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_000049_310--Hb_000280_080 Hb_000061_460 Hb_000061_460 Hb_000049_310--Hb_000061_460 Hb_012325_020 Hb_012325_020 Hb_000049_310--Hb_012325_020 Hb_002986_130 Hb_002986_130 Hb_031042_020--Hb_002986_130 Hb_001584_160 Hb_001584_160 Hb_031042_020--Hb_001584_160 Hb_031042_020--Hb_001584_150 Hb_000574_410 Hb_000574_410 Hb_031042_020--Hb_000574_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9533 40.7764 12.3296 13.6087 44.1018 42.0024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6155 31.4865 64.2388 37.254 17.7559

CAGE analysis