Hb_001226_020

Information

Type -
Description -
Location Contig1226: 46094-47806
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23980g
description POPTRDRAFT_561611; hypothetical protein
nr
ID XP_012077557.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
swissprot
ID Q3EDF8
description Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
trembl
ID A0A067KP25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07621 PE=4 SV=1
Gene Ontology
ID GO:0046872
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001226_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
2 Hb_001266_060 0.0723264464 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
3 Hb_003750_080 0.0914293335 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
4 Hb_000427_050 0.0927821657 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_003687_100 0.0941583473 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
6 Hb_004452_010 0.0958632004 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
7 Hb_034271_030 0.0991709234 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
8 Hb_000007_150 0.1009397795 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
9 Hb_010710_010 0.1031691192 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_000635_220 0.1034717869 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
11 Hb_000186_240 0.1059978904 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
12 Hb_010710_040 0.1069338232 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000179_210 0.1089878936 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
14 Hb_000200_050 0.1095445188 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000406_220 0.1104954701 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
16 Hb_001085_170 0.1108963525 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
17 Hb_000019_130 0.1111618106 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
18 Hb_000200_340 0.1116255937 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_000291_110 0.1118004781 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_006816_140 0.1120145301 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]

Gene co-expression network

sample Hb_001226_020 Hb_001226_020 Hb_001266_060 Hb_001266_060 Hb_001226_020--Hb_001266_060 Hb_003750_080 Hb_003750_080 Hb_001226_020--Hb_003750_080 Hb_000427_050 Hb_000427_050 Hb_001226_020--Hb_000427_050 Hb_003687_100 Hb_003687_100 Hb_001226_020--Hb_003687_100 Hb_004452_010 Hb_004452_010 Hb_001226_020--Hb_004452_010 Hb_034271_030 Hb_034271_030 Hb_001226_020--Hb_034271_030 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_001266_060--Hb_004452_010 Hb_001266_060--Hb_000427_050 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_001266_060--Hb_003687_100 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_000427_050--Hb_002678_020 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_000427_050--Hb_004452_010 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_000236_140 Hb_000236_140 Hb_003687_100--Hb_000236_140 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_007075_050 Hb_007075_050 Hb_003687_100--Hb_007075_050 Hb_007416_270 Hb_007416_270 Hb_003687_100--Hb_007416_270 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130 Hb_004452_010--Hb_001956_200 Hb_002636_050 Hb_002636_050 Hb_004452_010--Hb_002636_050 Hb_004452_010--Hb_002678_020 Hb_008500_010 Hb_008500_010 Hb_004452_010--Hb_008500_010 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51869 1.17723 0.379627 0.489912 2.31441 2.89441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34205 2.13292 4.14575 1.49793 0.710509

CAGE analysis