Hb_007075_050

Information

Type -
Description -
Location Contig7075: 82529-88215
Sequence    

Annotation

kegg
ID rcu:RCOM_0160700
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533676.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49619
description Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1
trembl
ID B9T607
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0160700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55158: 82348-83398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007075_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000935_050 0.0612841191 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
3 Hb_119600_040 0.0787679418 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
4 Hb_000019_130 0.0829465706 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
5 Hb_000019_060 0.0837156453 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
6 Hb_000236_140 0.0864843056 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_003687_100 0.0883058342 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
8 Hb_027472_170 0.0900725984 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
9 Hb_006846_110 0.0986188808 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
10 Hb_000002_050 0.0994155771 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
11 Hb_000574_350 0.1011355556 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
12 Hb_007747_200 0.1018602933 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
13 Hb_004128_180 0.1020182301 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005686_030 0.1046055486 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
15 Hb_000934_270 0.1079083521 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
16 Hb_000307_030 0.1095766181 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
17 Hb_004306_060 0.1106404949 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
18 Hb_000317_280 0.1117431825 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
19 Hb_000635_220 0.1120292916 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
20 Hb_000479_130 0.1140781429 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]

Gene co-expression network

sample Hb_007075_050 Hb_007075_050 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_000236_140 Hb_000236_140 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_000935_050--Hb_119600_040 Hb_000935_050--Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_000935_050--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_000935_050--Hb_000297_200 Hb_007747_200 Hb_007747_200 Hb_000935_050--Hb_007747_200 Hb_005686_030 Hb_005686_030 Hb_119600_040--Hb_005686_030 Hb_119600_040--Hb_027472_170 Hb_119600_040--Hb_000236_140 Hb_119600_040--Hb_000297_200 Hb_000019_130--Hb_027472_170 Hb_000019_130--Hb_007747_200 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_000236_140--Hb_003687_100 Hb_000236_140--Hb_004128_180 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_003687_100--Hb_007416_270 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30987 1.87309 0.389272 0.470358 2.03292 2.24476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6315 3.89718 6.68839 1.69437 1.00498

CAGE analysis