Hb_019654_090

Information

Type -
Description -
Location Contig19654: 75473-77584
Sequence    

Annotation

kegg
ID rcu:RCOM_1599850
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012073703.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
swissprot
ID P93005
description Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
trembl
ID A0A067KKT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08147 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
2 Hb_000019_060 0.0896207049 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
3 Hb_002056_060 0.0962233457 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
4 Hb_034406_020 0.0997977671 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
5 Hb_000072_080 0.1006911852 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
6 Hb_007645_080 0.1018289383 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
7 Hb_004951_040 0.1032676635 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
8 Hb_000223_150 0.1076104888 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
9 Hb_000366_090 0.1094758203 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
10 Hb_004128_180 0.1094947488 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000377_060 0.1111435188 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_000264_020 0.1116962025 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
13 Hb_008453_090 0.1126705305 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
14 Hb_000230_380 0.1144282395 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
15 Hb_000125_030 0.1145915096 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
16 Hb_168319_030 0.1147346551 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
17 Hb_007429_030 0.115431714 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
18 Hb_005532_060 0.1158308615 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
19 Hb_001338_040 0.1159762772 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_021409_160 0.1161701358 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]

Gene co-expression network

sample Hb_019654_090 Hb_019654_090 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_168319_030 Hb_168319_030 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_002056_060--Hb_000072_080 Hb_000120_680 Hb_000120_680 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010 Hb_021409_030 Hb_021409_030 Hb_034406_020--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_034406_020--Hb_000258_170 Hb_034406_020--Hb_000072_080 Hb_007044_060 Hb_007044_060 Hb_034406_020--Hb_007044_060 Hb_001287_030 Hb_001287_030 Hb_034406_020--Hb_001287_030 Hb_012753_160 Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000072_080--Hb_000120_680 Hb_003185_050 Hb_003185_050 Hb_007645_080--Hb_003185_050 Hb_007645_080--Hb_002235_280 Hb_007645_080--Hb_000072_080 Hb_007645_080--Hb_000366_090 Hb_000349_290 Hb_000349_290 Hb_007645_080--Hb_000349_290 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_055062_030 Hb_055062_030 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52161 1.37155 0.517996 0.708172 1.5429 1.9443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78354 6.31985 6.85799 1.16345 1.02627

CAGE analysis