Hb_168319_030

Information

Type -
Description -
Location Contig168319: 28542-29852
Sequence    

Annotation

kegg
ID pmum:103325602
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012067833.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q9C501
description Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
trembl
ID M5X8N1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021308mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168319_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_000366_090 0.0597349372 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
3 Hb_004375_150 0.0746346912 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
4 Hb_000019_060 0.0803037161 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
5 Hb_027472_170 0.0843382305 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
6 Hb_000117_090 0.0854957066 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
7 Hb_021409_030 0.1001113903 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
8 Hb_004607_030 0.1010016914 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
9 Hb_000033_020 0.1015584728 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_005228_070 0.1030371307 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
11 Hb_004128_180 0.1044441149 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000110_320 0.1050571087 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
13 Hb_011030_020 0.1066978724 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_000307_030 0.1074263601 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
15 Hb_034406_020 0.1087594264 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
16 Hb_002284_200 0.109973594 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_002056_060 0.1107936524 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_025557_030 0.112106277 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
19 Hb_000696_040 0.1132820301 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_019654_090 0.1147346551 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]

Gene co-expression network

sample Hb_168319_030 Hb_168319_030 Hb_000366_090 Hb_000366_090 Hb_168319_030--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_000019_060 Hb_000019_060 Hb_168319_030--Hb_000019_060 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000366_090--Hb_000117_090 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_000366_090--Hb_004375_150 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_000009_450 Hb_000009_450 Hb_004375_150--Hb_000009_450 Hb_004375_150--Hb_000033_020 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_000019_130 Hb_000019_130 Hb_027472_170--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_000039_160 Hb_000039_160 Hb_000117_090--Hb_000039_160 Hb_008566_050 Hb_008566_050 Hb_000117_090--Hb_008566_050 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82185 1.92006 1.20423 1.03689 1.18842 2.24598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89944 4.88495 6.01261 1.31022 0.896201

CAGE analysis