Hb_000307_030

Information

Type -
Description -
Location Contig307: 62068-63924
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01620g
description POPTRDRAFT_850480; hypothetical protein
nr
ID XP_012073710.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
swissprot
ID Q9FND6
description Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1
trembl
ID A0A067KX60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08151 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32404: 62699-62883 , PASA_asmbl_32405: 63075-63426 , PASA_asmbl_32406: 63542-63660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
2 Hb_027472_170 0.0813990103 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
3 Hb_016901_010 0.0858190689 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
4 Hb_000007_150 0.0885836424 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
5 Hb_000297_200 0.0892865362 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
6 Hb_000935_050 0.0922082609 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
7 Hb_002218_010 0.0950918524 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_000063_140 0.0959239933 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
9 Hb_004607_030 0.0973606815 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
10 Hb_000457_150 0.0977063673 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_010172_050 0.0999307598 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
12 Hb_000019_130 0.1006134199 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
13 Hb_000934_270 0.1009602958 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
14 Hb_000033_020 0.1013039408 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_008695_100 0.1014700451 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
16 Hb_000482_010 0.1021383393 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
17 Hb_007747_200 0.1021914001 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
18 Hb_000997_400 0.1033388261 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
19 Hb_000696_040 0.1038694926 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_004128_180 0.1043551567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_030 Hb_000307_030 Hb_027472_170 Hb_027472_170 Hb_000307_030--Hb_027472_170 Hb_016901_010 Hb_016901_010 Hb_000307_030--Hb_016901_010 Hb_000007_150 Hb_000007_150 Hb_000307_030--Hb_000007_150 Hb_000297_200 Hb_000297_200 Hb_000307_030--Hb_000297_200 Hb_000935_050 Hb_000935_050 Hb_000307_030--Hb_000935_050 Hb_002218_010 Hb_002218_010 Hb_000307_030--Hb_002218_010 Hb_000019_130 Hb_000019_130 Hb_027472_170--Hb_000019_130 Hb_027472_170--Hb_000935_050 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_029584_130 Hb_029584_130 Hb_000007_150--Hb_029584_130 Hb_000007_150--Hb_000019_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_034585_060 Hb_034585_060 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_000427_050 Hb_000427_050 Hb_000007_150--Hb_000427_050 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_000297_200--Hb_029584_130 Hb_000297_200--Hb_000935_050 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_007075_050 Hb_007075_050 Hb_000935_050--Hb_007075_050 Hb_000935_050--Hb_000019_130 Hb_007747_200 Hb_007747_200 Hb_000935_050--Hb_007747_200 Hb_007532_030 Hb_007532_030 Hb_002218_010--Hb_007532_030 Hb_000213_100 Hb_000213_100 Hb_002218_010--Hb_000213_100 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15626 2.08351 0.585867 0.957839 1.46529 1.75169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54429 2.85442 4.56215 0.929131 0.894668

CAGE analysis