Hb_034585_060

Information

Type -
Description -
Location Contig34585: 62477-64609
Sequence    

Annotation

kegg
ID rcu:RCOM_0603130
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079562.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
swissprot
ID Q9SCT2
description Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
trembl
ID A0A067K6X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36094: 62736-62892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034585_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
2 Hb_029584_130 0.0711970589 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
3 Hb_000007_150 0.0817970516 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
4 Hb_000022_250 0.0822696649 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
5 Hb_000000_250 0.0834613576 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
6 Hb_001159_100 0.0873654516 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
7 Hb_002678_020 0.0895189769 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
8 Hb_006922_110 0.0923585665 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
9 Hb_000427_050 0.0940291259 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_007483_100 0.096262426 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
11 Hb_000406_220 0.0979491079 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
12 Hb_004452_010 0.1017589777 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
13 Hb_004128_060 0.1034798087 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
14 Hb_006949_040 0.1037310022 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_011161_010 0.1039747568 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
16 Hb_000297_200 0.1051736076 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
17 Hb_002810_020 0.1056287289 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
18 Hb_007747_200 0.1063256653 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
19 Hb_001507_020 0.1090918437 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
20 Hb_010172_050 0.1092872692 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]

Gene co-expression network

sample Hb_034585_060 Hb_034585_060 Hb_029584_130 Hb_029584_130 Hb_034585_060--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_034585_060--Hb_000007_150 Hb_000022_250 Hb_000022_250 Hb_034585_060--Hb_000022_250 Hb_000000_250 Hb_000000_250 Hb_034585_060--Hb_000000_250 Hb_001159_100 Hb_001159_100 Hb_034585_060--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_034585_060--Hb_002678_020 Hb_029584_130--Hb_001159_100 Hb_029584_130--Hb_000007_150 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000427_050 Hb_000427_050 Hb_029584_130--Hb_000427_050 Hb_000019_130 Hb_000019_130 Hb_000007_150--Hb_000019_130 Hb_000007_150--Hb_000000_250 Hb_000007_150--Hb_000297_200 Hb_000007_150--Hb_000427_050 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_001159_100--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_002496_030 Hb_002496_030 Hb_001159_100--Hb_002496_030 Hb_001159_100--Hb_000427_050 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_002678_020--Hb_000427_050 Hb_000204_210 Hb_000204_210 Hb_002678_020--Hb_000204_210 Hb_002678_020--Hb_000000_250 Hb_002311_040 Hb_002311_040 Hb_002678_020--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95513 1.59484 0.413714 0.752389 0.982851 3.08751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38718 2.26569 3.23559 1.09813 0.840345

CAGE analysis