Hb_002496_030

Information

Type -
Description -
Location Contig2496: 35959-38361
Sequence    

Annotation

kegg
ID rcu:RCOM_1621780
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067732.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
swissprot
ID Q9C507
description Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1
trembl
ID B9RCX4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1621780 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25949: 31332-35299 , PASA_asmbl_25950: 32089-35203 , PASA_asmbl_25953: 36442-36808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002496_030 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
2 Hb_000030_300 0.0518257976 - - Thioredoxin, putative [Ricinus communis]
3 Hb_000453_170 0.0528557498 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001269_550 0.0543193295 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
5 Hb_004837_040 0.06326827 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
6 Hb_007951_050 0.065536018 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000392_300 0.0697704456 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
8 Hb_000120_950 0.0705131689 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_002026_180 0.0714327519 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
10 Hb_011316_050 0.0725036466 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
11 Hb_006185_050 0.0725501297 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
12 Hb_001159_100 0.0727617019 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
13 Hb_048937_040 0.0729347791 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
14 Hb_001595_030 0.0733970091 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
15 Hb_006332_020 0.074068336 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
16 Hb_000152_820 0.0744001211 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
17 Hb_000808_230 0.0746643973 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
18 Hb_002016_110 0.0748200202 - - transducin family protein [Populus trichocarpa]
19 Hb_000062_240 0.0748867281 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
20 Hb_007317_210 0.0754970603 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]

Gene co-expression network

sample Hb_002496_030 Hb_002496_030 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_000453_170 Hb_000453_170 Hb_002496_030--Hb_000453_170 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_011316_050 Hb_011316_050 Hb_000453_170--Hb_011316_050 Hb_006316_040 Hb_006316_040 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000827_070 Hb_000827_070 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_019654_190 Hb_019654_190 Hb_001269_550--Hb_019654_190 Hb_000776_110 Hb_000776_110 Hb_001269_550--Hb_000776_110 Hb_000152_820 Hb_000152_820 Hb_001269_550--Hb_000152_820 Hb_006400_060 Hb_006400_060 Hb_001269_550--Hb_006400_060 Hb_002016_110 Hb_002016_110 Hb_001269_550--Hb_002016_110 Hb_000062_240 Hb_000062_240 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_006185_050 Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000030_010 Hb_000030_010 Hb_000392_300--Hb_000030_010 Hb_000089_220 Hb_000089_220 Hb_000392_300--Hb_000089_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34017 1.36174 0.956795 0.732343 2.02992 2.47017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64163 1.98845 2.70934 1.27991 0.893877

CAGE analysis