Hb_011316_050

Information

Type -
Description -
Location Contig11316: 18502-20311
Sequence    

Annotation

kegg
ID cic:CICLE_v10004643mg
description hypothetical protein
nr
ID XP_006421782.1
description hypothetical protein CICLE_v10004643mg [Citrus clementina]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067FGS4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038890mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g66520-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03938: 17380-17674 , PASA_asmbl_03939: 19404-19607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_050 0.0 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
2 Hb_000453_170 0.0495507634 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_006316_040 0.0632448451 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
4 Hb_002496_030 0.0725036466 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
5 Hb_000827_070 0.0777875938 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_001242_060 0.0795504912 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
7 Hb_004684_010 0.0832665565 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
8 Hb_001595_030 0.0833537727 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
9 Hb_000788_100 0.0836354011 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
10 Hb_000165_250 0.0840228629 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
11 Hb_004221_020 0.0847622868 - - protein binding protein, putative [Ricinus communis]
12 Hb_007416_180 0.0869711408 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
13 Hb_001507_020 0.087960429 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
14 Hb_002027_250 0.0880643192 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004155_010 0.0881107745 - - PREDICTED: la protein 1 [Jatropha curcas]
16 Hb_000502_050 0.0881788127 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
17 Hb_006185_050 0.0883627728 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_000201_100 0.0887109599 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
19 Hb_000392_300 0.0891877118 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
20 Hb_010139_040 0.0898964179 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011316_050 Hb_011316_050 Hb_000453_170 Hb_000453_170 Hb_011316_050--Hb_000453_170 Hb_006316_040 Hb_006316_040 Hb_011316_050--Hb_006316_040 Hb_002496_030 Hb_002496_030 Hb_011316_050--Hb_002496_030 Hb_000827_070 Hb_000827_070 Hb_011316_050--Hb_000827_070 Hb_001242_060 Hb_001242_060 Hb_011316_050--Hb_001242_060 Hb_004684_010 Hb_004684_010 Hb_011316_050--Hb_004684_010 Hb_000453_170--Hb_002496_030 Hb_000453_170--Hb_006316_040 Hb_004221_020 Hb_004221_020 Hb_000453_170--Hb_004221_020 Hb_000453_170--Hb_000827_070 Hb_000289_060 Hb_000289_060 Hb_000453_170--Hb_000289_060 Hb_008500_010 Hb_008500_010 Hb_006316_040--Hb_008500_010 Hb_006316_040--Hb_000827_070 Hb_010172_090 Hb_010172_090 Hb_006316_040--Hb_010172_090 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_000030_300 Hb_000030_300 Hb_002496_030--Hb_000030_300 Hb_001269_550 Hb_001269_550 Hb_002496_030--Hb_001269_550 Hb_004837_040 Hb_004837_040 Hb_002496_030--Hb_004837_040 Hb_007951_050 Hb_007951_050 Hb_002496_030--Hb_007951_050 Hb_000392_300 Hb_000392_300 Hb_002496_030--Hb_000392_300 Hb_000827_070--Hb_005188_050 Hb_045793_010 Hb_045793_010 Hb_000827_070--Hb_045793_010 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060 Hb_007416_180 Hb_007416_180 Hb_004684_010--Hb_007416_180 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31761 1.02797 0.647205 0.394115 1.07249 1.47864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.74688 1.2623 1.39556 0.503174 0.685813

CAGE analysis