Hb_010172_090

Information

Type -
Description -
Location Contig10172: 79540-81150
Sequence    

Annotation

kegg
ID rcu:RCOM_1288600
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002531063.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C9A2
description Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1
trembl
ID B9SYJ4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1288600 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00819: 78677-79053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010172_090 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000229_020 0.0452679196 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
3 Hb_006316_040 0.0743424186 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
4 Hb_008500_010 0.0756265 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
5 Hb_012807_050 0.0787030967 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
6 Hb_001584_150 0.0797949904 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
7 Hb_004767_050 0.0840689553 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
8 Hb_000264_320 0.0898674323 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
9 Hb_005015_070 0.0908287222 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
10 Hb_000827_070 0.0917028756 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_000204_210 0.0917269456 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_015807_070 0.0921423598 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
13 Hb_012656_030 0.0942906007 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
14 Hb_000453_170 0.0952293182 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_048219_010 0.0962138447 - - coronatine-insensitive 1 [Hevea brasiliensis]
16 Hb_004374_070 0.0968283756 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
17 Hb_007416_180 0.0971258457 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_045793_010 0.0979216875 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
19 Hb_000056_240 0.0983425126 - - PREDICTED: cullin-3A [Jatropha curcas]
20 Hb_120327_010 0.0987209853 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]

Gene co-expression network

sample Hb_010172_090 Hb_010172_090 Hb_000229_020 Hb_000229_020 Hb_010172_090--Hb_000229_020 Hb_006316_040 Hb_006316_040 Hb_010172_090--Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_010172_090--Hb_008500_010 Hb_012807_050 Hb_012807_050 Hb_010172_090--Hb_012807_050 Hb_001584_150 Hb_001584_150 Hb_010172_090--Hb_001584_150 Hb_004767_050 Hb_004767_050 Hb_010172_090--Hb_004767_050 Hb_000229_020--Hb_012807_050 Hb_045793_010 Hb_045793_010 Hb_000229_020--Hb_045793_010 Hb_015807_070 Hb_015807_070 Hb_000229_020--Hb_015807_070 Hb_000827_070 Hb_000827_070 Hb_000229_020--Hb_000827_070 Hb_000229_020--Hb_006316_040 Hb_006316_040--Hb_008500_010 Hb_000453_170 Hb_000453_170 Hb_006316_040--Hb_000453_170 Hb_011316_050 Hb_011316_050 Hb_006316_040--Hb_011316_050 Hb_006316_040--Hb_000827_070 Hb_005188_050 Hb_005188_050 Hb_006316_040--Hb_005188_050 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_012807_050--Hb_004767_050 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_001584_150--Hb_002311_040 Hb_048219_010 Hb_048219_010 Hb_004767_050--Hb_048219_010 Hb_001818_070 Hb_001818_070 Hb_004767_050--Hb_001818_070 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_011491_010 Hb_011491_010 Hb_004767_050--Hb_011491_010 Hb_140506_010 Hb_140506_010 Hb_004767_050--Hb_140506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74793 3.17977 0.635263 0.848364 1.85128 2.73813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43887 2.58105 3.07073 1.72451 1.47254

CAGE analysis