Hb_012807_050

Information

Type desease resistance
Description Gene Name: CDC48_N
Location Contig12807: 42844-48234
Sequence    

Annotation

kegg
ID tcc:TCM_042132
description ATPase, AAA-type, CDC48 protein
nr
ID XP_012064740.1
description PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID A0A067LHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05462 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08679: 42806-48187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_050 0.0 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
2 Hb_004785_060 0.0725652685 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
3 Hb_000229_020 0.0742071282 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
4 Hb_010172_090 0.0787030967 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_076693_020 0.0826368504 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
6 Hb_000000_370 0.0847859469 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
7 Hb_004767_050 0.0863535783 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
8 Hb_093084_060 0.0888877025 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
9 Hb_000859_060 0.0899937999 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
10 Hb_009564_030 0.0928889355 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
11 Hb_006847_040 0.0947784736 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
12 Hb_048219_010 0.0951877466 - - coronatine-insensitive 1 [Hevea brasiliensis]
13 Hb_012395_220 0.0952939486 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_042038_020 0.0955868479 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
15 Hb_023827_040 0.0960908087 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
16 Hb_001021_170 0.0962845255 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
17 Hb_000125_170 0.096425137 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
18 Hb_045793_010 0.0964799386 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
19 Hb_000181_070 0.0966194409 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002813_050 0.0968219728 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]

Gene co-expression network

sample Hb_012807_050 Hb_012807_050 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_000859_060 Hb_000859_060 Hb_004785_060--Hb_000859_060 Hb_004785_060--Hb_000000_370 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_000229_020--Hb_010172_090 Hb_045793_010 Hb_045793_010 Hb_000229_020--Hb_045793_010 Hb_015807_070 Hb_015807_070 Hb_000229_020--Hb_015807_070 Hb_000827_070 Hb_000827_070 Hb_000229_020--Hb_000827_070 Hb_006316_040 Hb_006316_040 Hb_000229_020--Hb_006316_040 Hb_010172_090--Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_010172_090--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_010172_090--Hb_001584_150 Hb_010172_090--Hb_004767_050 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_000000_370--Hb_000859_060 Hb_000085_100 Hb_000085_100 Hb_000000_370--Hb_000085_100 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_048219_010 Hb_048219_010 Hb_004767_050--Hb_048219_010 Hb_001818_070 Hb_001818_070 Hb_004767_050--Hb_001818_070 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_011491_010 Hb_011491_010 Hb_004767_050--Hb_011491_010 Hb_140506_010 Hb_140506_010 Hb_004767_050--Hb_140506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.414 213.559 34.4802 56.2705 104.746 166.999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.167 120.056 157.57 93.7588 44.5101

CAGE analysis