Hb_000085_100

Information

Type -
Description -
Location Contig85: 72520-77141
Sequence    

Annotation

kegg
ID rcu:RCOM_0546870
description Protein C6orf55, putative
nr
ID XP_012070918.1
description PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
swissprot
ID Q9SZ15
description Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana GN=LIP5 PE=1 SV=1
trembl
ID A0A067L565
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00956 PE=4 SV=1
Gene Ontology
ID GO:0016192
description vacuolar protein sorting-associated protein vta1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60332: 66849-71912 , PASA_asmbl_60333: 75499-75973 , PASA_asmbl_60334: 76131-77010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_100 0.0 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
2 Hb_000859_060 0.0653672941 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
3 Hb_001178_140 0.0687673325 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
4 Hb_000000_370 0.071707415 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
5 Hb_004204_170 0.084389951 - - synaptosomal associated protein, putative [Ricinus communis]
6 Hb_126643_020 0.0900287175 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
7 Hb_000629_010 0.0900755558 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_004837_040 0.0907677318 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
9 Hb_001277_270 0.0928047353 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
10 Hb_007813_040 0.0936917107 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
11 Hb_000856_190 0.0961314784 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
12 Hb_000732_140 0.0971852945 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
13 Hb_009767_100 0.0976750051 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
14 Hb_002950_100 0.1004950805 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_000538_270 0.1009768816 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
16 Hb_003862_050 0.1017781232 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
17 Hb_011218_040 0.1021603231 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
18 Hb_004785_060 0.1029807463 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
19 Hb_001617_050 0.1032728983 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
20 Hb_005348_140 0.1041809486 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000085_100 Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_000085_100--Hb_000859_060 Hb_001178_140 Hb_001178_140 Hb_000085_100--Hb_001178_140 Hb_000000_370 Hb_000000_370 Hb_000085_100--Hb_000000_370 Hb_004204_170 Hb_004204_170 Hb_000085_100--Hb_004204_170 Hb_126643_020 Hb_126643_020 Hb_000085_100--Hb_126643_020 Hb_000629_010 Hb_000629_010 Hb_000085_100--Hb_000629_010 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000859_060--Hb_000000_370 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_001178_140--Hb_004204_170 Hb_004837_040 Hb_004837_040 Hb_000000_370--Hb_004837_040 Hb_000000_370--Hb_004785_060 Hb_000062_250 Hb_000062_250 Hb_000000_370--Hb_000062_250 Hb_012807_050 Hb_012807_050 Hb_000000_370--Hb_012807_050 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_002685_010 Hb_002685_010 Hb_126643_020--Hb_002685_010 Hb_002085_110 Hb_002085_110 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3108 33.1886 19.0939 11.1098 22.7582 27.8588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2067 22.6539 43.7235 25.8431 7.83375

CAGE analysis