Hb_001617_050

Information

Type -
Description -
Location Contig1617: 26278-30539
Sequence    

Annotation

kegg
ID rcu:RCOM_0905070
description hypothetical protein
nr
ID XP_012091364.1
description PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21232 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14507: 26300-29437 , PASA_asmbl_14508: 29445-30493
cDNA
(Sanger)
(ID:Location)		 004_F14.ab1: 26300-29220

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001617_050 0.0 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
2 Hb_005348_140 0.0570988863 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
3 Hb_010128_080 0.0703112081 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
4 Hb_000646_050 0.0737571921 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
5 Hb_050622_050 0.0746518383 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
6 Hb_000538_270 0.0746586122 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
7 Hb_001226_040 0.082795005 - - protein with unknown function [Ricinus communis]
8 Hb_008725_260 0.0829267642 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
9 Hb_000175_460 0.083373249 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_002110_150 0.0839939012 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_000395_190 0.084049635 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
12 Hb_089032_040 0.084398356 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
13 Hb_004204_170 0.0851093229 - - synaptosomal associated protein, putative [Ricinus communis]
14 Hb_009178_030 0.0863705126 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007416_180 0.0864776896 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_006938_080 0.0866552118 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
17 Hb_002105_040 0.0869695098 - - -
18 Hb_003976_030 0.0876305472 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
19 Hb_000063_140 0.0880889923 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
20 Hb_000289_060 0.0885839116 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]

Gene co-expression network

sample Hb_001617_050 Hb_001617_050 Hb_005348_140 Hb_005348_140 Hb_001617_050--Hb_005348_140 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_000646_050 Hb_000646_050 Hb_001617_050--Hb_000646_050 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001226_040 Hb_001226_040 Hb_001617_050--Hb_001226_040 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_000395_190 Hb_000395_190 Hb_010128_080--Hb_000395_190 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_000099_080 Hb_000099_080 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_089032_040 Hb_089032_040 Hb_010128_080--Hb_089032_040 Hb_006938_080 Hb_006938_080 Hb_000646_050--Hb_006938_080 Hb_000646_050--Hb_005348_140 Hb_000646_050--Hb_000003_250 Hb_065525_040 Hb_065525_040 Hb_000646_050--Hb_065525_040 Hb_027380_130 Hb_027380_130 Hb_000646_050--Hb_027380_130 Hb_004117_260 Hb_004117_260 Hb_050622_050--Hb_004117_260 Hb_006017_010 Hb_006017_010 Hb_050622_050--Hb_006017_010 Hb_000297_010 Hb_000297_010 Hb_050622_050--Hb_000297_010 Hb_002110_150 Hb_002110_150 Hb_050622_050--Hb_002110_150 Hb_001318_270 Hb_001318_270 Hb_050622_050--Hb_001318_270 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_002686_030 Hb_002686_030 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_002499_040 Hb_002499_040 Hb_001226_040--Hb_002499_040 Hb_001226_040--Hb_000757_060 Hb_001226_040--Hb_000538_270 Hb_000556_160 Hb_000556_160 Hb_001226_040--Hb_000556_160 Hb_008221_140 Hb_008221_140 Hb_001226_040--Hb_008221_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5323 10.0968 6.22514 7.80517 9.23398 8.92424
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.04276 10.5366 18.2228 9.48031 5.52715

CAGE analysis