Hb_001005_190

Information

Type -
Description -
Location Contig1005: 210069-211169
Sequence    

Annotation

kegg
ID rcu:RCOM_1444770
description hypothetical protein
nr
ID XP_012067374.1
description PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LT84
description UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2
trembl
ID A0A067LCP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26887 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00346: 211026-211546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_190 0.0 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
2 Hb_011491_010 0.047647669 - - Protein YME1, putative [Ricinus communis]
3 Hb_009767_100 0.0525984796 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_000538_270 0.0594524251 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
5 Hb_007163_120 0.0602650268 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_005288_010 0.0657695144 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_008511_090 0.0683903239 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
8 Hb_002043_140 0.0717709583 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
9 Hb_012055_060 0.0727854508 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
10 Hb_003370_030 0.0746069974 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
11 Hb_033772_030 0.0763114984 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
12 Hb_003052_140 0.0769612781 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
13 Hb_007416_180 0.0773510193 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_000243_250 0.0780400499 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
15 Hb_000322_150 0.0792942307 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
16 Hb_007765_110 0.0802861971 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
17 Hb_001838_060 0.0804327084 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
18 Hb_003055_060 0.081414902 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
19 Hb_000189_560 0.0814711901 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
20 Hb_002686_030 0.0844374503 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001005_190 Hb_001005_190 Hb_011491_010 Hb_011491_010 Hb_001005_190--Hb_011491_010 Hb_009767_100 Hb_009767_100 Hb_001005_190--Hb_009767_100 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_007163_120 Hb_007163_120 Hb_001005_190--Hb_007163_120 Hb_005288_010 Hb_005288_010 Hb_001005_190--Hb_005288_010 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_009767_100--Hb_005288_010 Hb_000859_060 Hb_000859_060 Hb_009767_100--Hb_000859_060 Hb_003055_060 Hb_003055_060 Hb_009767_100--Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_002686_030 Hb_002686_030 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_000070_080 Hb_000070_080 Hb_008511_090--Hb_000070_080 Hb_004109_030 Hb_004109_030 Hb_008511_090--Hb_004109_030 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53921 2.03686 0.781869 0.852429 1.27341 1.07661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08033 1.41625 1.44227 1.19343 0.656119

CAGE analysis