Hb_005288_010

Information

Type -
Description -
Location Contig5288: 5163-8164
Sequence    

Annotation

kegg
ID rcu:RCOM_0609820
description ubiquitin-protein ligase, putative
nr
ID XP_002521998.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID B9S7M9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0609820 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box fbd lrr-repeat protein at1g13570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47150: 4826-5059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_009767_100 0.0625928094 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
3 Hb_001005_190 0.0657695144 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
4 Hb_000322_150 0.0767028632 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
5 Hb_000363_400 0.0787754738 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
6 Hb_003055_060 0.0798256948 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
7 Hb_002872_040 0.0909538053 - - pumilio, putative [Ricinus communis]
8 Hb_011491_010 0.0916515269 - - Protein YME1, putative [Ricinus communis]
9 Hb_000243_250 0.0916787824 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
10 Hb_010381_030 0.093242483 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
11 Hb_002636_100 0.094810213 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
12 Hb_000256_140 0.0956592739 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
13 Hb_002043_140 0.096749264 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
14 Hb_000330_040 0.0971233854 - - PREDICTED: protein RER1B-like [Jatropha curcas]
15 Hb_000092_020 0.0988932062 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
16 Hb_033772_030 0.1002395497 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
17 Hb_002078_220 0.1005386472 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_008511_090 0.1010233034 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
19 Hb_012055_060 0.1011043893 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
20 Hb_007163_120 0.1029016618 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_005288_010 Hb_005288_010 Hb_009767_100 Hb_009767_100 Hb_005288_010--Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_005288_010--Hb_001005_190 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_003055_060 Hb_003055_060 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_009767_100--Hb_001005_190 Hb_000859_060 Hb_000859_060 Hb_009767_100--Hb_000859_060 Hb_009767_100--Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560 Hb_011491_010 Hb_011491_010 Hb_001005_190--Hb_011491_010 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_007163_120 Hb_007163_120 Hb_001005_190--Hb_007163_120 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_000352_260 Hb_000352_260 Hb_000363_400--Hb_000352_260 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005389_160 Hb_005389_160 Hb_000363_400--Hb_005389_160 Hb_008160_030 Hb_008160_030 Hb_000363_400--Hb_008160_030 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_003055_060--Hb_012055_060 Hb_000243_250 Hb_000243_250 Hb_003055_060--Hb_000243_250 Hb_003055_060--Hb_011491_010 Hb_003055_060--Hb_001005_190 Hb_002872_040--Hb_000243_250 Hb_000003_190 Hb_000003_190 Hb_002872_040--Hb_000003_190 Hb_001080_230 Hb_001080_230 Hb_002872_040--Hb_001080_230 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_000574_540 Hb_000574_540 Hb_002872_040--Hb_000574_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3901 39.0786 13.9474 10.2573 20.9425 14.1598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4285 19.2454 20.0708 23.6691 9.19019

CAGE analysis