Hb_008160_030

Information

Type -
Description -
Location Contig8160: 35748-44750
Sequence    

Annotation

kegg
ID rcu:RCOM_0864940
description DNA binding protein, putative
nr
ID XP_002519830.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID O22812
description AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2
trembl
ID B9S1G5
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0864940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59434: 36646-43210 , PASA_asmbl_59435: 41482-41721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008160_030 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000352_260 0.0387804142 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
3 Hb_000940_200 0.0802829982 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
4 Hb_009083_070 0.0816442459 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
5 Hb_000363_400 0.0825150221 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
6 Hb_145880_010 0.0875198587 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_184798_080 0.0899653967 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
8 Hb_002325_040 0.0909481188 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
9 Hb_029695_020 0.0911696913 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
10 Hb_002046_110 0.0919522149 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
11 Hb_001318_020 0.0940557174 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
12 Hb_000862_040 0.0948071809 - - ara4-interacting protein, putative [Ricinus communis]
13 Hb_012114_080 0.0954275943 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
14 Hb_000174_150 0.0957803122 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
15 Hb_010417_070 0.096136277 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
16 Hb_000139_320 0.0966701516 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
17 Hb_000823_030 0.0971697278 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
18 Hb_140049_080 0.0974174179 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
19 Hb_005389_160 0.0985824974 - - PREDICTED: casein kinase I [Jatropha curcas]
20 Hb_001723_010 0.099434097 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]

Gene co-expression network

sample Hb_008160_030 Hb_008160_030 Hb_000352_260 Hb_000352_260 Hb_008160_030--Hb_000352_260 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_009083_070 Hb_009083_070 Hb_008160_030--Hb_009083_070 Hb_000363_400 Hb_000363_400 Hb_008160_030--Hb_000363_400 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080 Hb_000352_260--Hb_000363_400 Hb_010417_070 Hb_010417_070 Hb_000352_260--Hb_010417_070 Hb_000823_030 Hb_000823_030 Hb_000352_260--Hb_000823_030 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010 Hb_000862_040 Hb_000862_040 Hb_000940_200--Hb_000862_040 Hb_000631_120 Hb_000631_120 Hb_000940_200--Hb_000631_120 Hb_001205_200 Hb_001205_200 Hb_000940_200--Hb_001205_200 Hb_000363_120 Hb_000363_120 Hb_000940_200--Hb_000363_120 Hb_000059_020 Hb_000059_020 Hb_000940_200--Hb_000059_020 Hb_003866_080 Hb_003866_080 Hb_000940_200--Hb_003866_080 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005288_010 Hb_005288_010 Hb_000363_400--Hb_005288_010 Hb_005389_160 Hb_005389_160 Hb_000363_400--Hb_005389_160 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_145880_010--Hb_009083_070 Hb_001318_020 Hb_001318_020 Hb_145880_010--Hb_001318_020 Hb_145880_010--Hb_184798_080 Hb_006922_010 Hb_006922_010 Hb_145880_010--Hb_006922_010 Hb_145880_010--Hb_001205_200 Hb_001147_110 Hb_001147_110 Hb_184798_080--Hb_001147_110 Hb_002325_040 Hb_002325_040 Hb_184798_080--Hb_002325_040 Hb_184798_080--Hb_004129_070 Hb_184798_080--Hb_002276_240 Hb_184798_080--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0953 29.4984 19.7628 17.7823 16.0073 13.5365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.64205 8.9621 12.8794 26.3577 8.60916

CAGE analysis