Hb_000352_260

Information

Type -
Description -
Location Contig352: 222894-223934
Sequence    

Annotation

kegg
ID rcu:RCOM_1443640
description WD-repeat protein, putative
nr
ID XP_012067415.1
description PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
swissprot
ID Q9LPV9
description WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1
trembl
ID A0A067LCS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26917 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36588: 222191-224012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_260 0.0 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
2 Hb_008160_030 0.0387804142 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000363_400 0.0722701787 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
4 Hb_010417_070 0.0832599368 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
5 Hb_000823_030 0.0858099564 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
6 Hb_009083_070 0.0864000908 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
7 Hb_001723_010 0.0891505265 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
8 Hb_011618_090 0.0903647918 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_012114_080 0.0912079162 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
10 Hb_003835_070 0.0914443257 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
11 Hb_000107_660 0.0915947305 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
12 Hb_140049_080 0.0918381054 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
13 Hb_002046_110 0.0923367528 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
14 Hb_184798_080 0.0930921161 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
15 Hb_001430_080 0.093093507 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
16 Hb_000922_360 0.0940834148 - - -
17 Hb_001047_200 0.0943605389 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
18 Hb_001301_170 0.0944261058 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
19 Hb_005918_010 0.094434023 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
20 Hb_029695_020 0.0946780971 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000352_260 Hb_000352_260 Hb_008160_030 Hb_008160_030 Hb_000352_260--Hb_008160_030 Hb_000363_400 Hb_000363_400 Hb_000352_260--Hb_000363_400 Hb_010417_070 Hb_010417_070 Hb_000352_260--Hb_010417_070 Hb_000823_030 Hb_000823_030 Hb_000352_260--Hb_000823_030 Hb_009083_070 Hb_009083_070 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_008160_030--Hb_009083_070 Hb_008160_030--Hb_000363_400 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005288_010 Hb_005288_010 Hb_000363_400--Hb_005288_010 Hb_005389_160 Hb_005389_160 Hb_000363_400--Hb_005389_160 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_010417_070--Hb_005389_160 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_000340_030 Hb_000340_030 Hb_001723_010--Hb_000340_030 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_003711_010 Hb_003711_010 Hb_001723_010--Hb_003711_010 Hb_000139_320 Hb_000139_320 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3375 22.124 17.0908 11.7059 13.1539 11.2149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61784 7.1672 11.7566 21.5432 8.16862

CAGE analysis