Hb_000363_400

Information

Type -
Description -
Location Contig363: 353313-358402
Sequence    

Annotation

kegg
ID rcu:RCOM_0546870
description Protein C6orf55, putative
nr
ID XP_012070918.1
description PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
swissprot
ID Q9SZ15
description Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana GN=LIP5 PE=1 SV=1
trembl
ID A0A067L565
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00956 PE=4 SV=1
Gene Ontology
ID GO:0016192
description vacuolar protein sorting-associated protein vta1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37338: 355321-355773 , PASA_asmbl_37339: 353969-358308 , PASA_asmbl_37340: 356139-356383 , PASA_asmbl_37341: 359128-363657 , PASA_asmbl_37342: 359128-364659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_400 0.0 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
2 Hb_000352_260 0.0722701787 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
3 Hb_000922_360 0.07828676 - - -
4 Hb_005288_010 0.0787754738 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005389_160 0.0788147665 - - PREDICTED: casein kinase I [Jatropha curcas]
6 Hb_008160_030 0.0825150221 - - DNA binding protein, putative [Ricinus communis]
7 Hb_010381_030 0.0853395876 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
8 Hb_002900_090 0.0862651179 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
9 Hb_001104_170 0.0868016355 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
10 Hb_010417_070 0.0872680871 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
11 Hb_002217_170 0.0878478588 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
12 Hb_003835_070 0.0899662416 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
13 Hb_000373_100 0.0927623327 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_000317_370 0.0953538699 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
15 Hb_033772_030 0.0963063938 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
16 Hb_000565_040 0.0963368251 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
17 Hb_000107_660 0.0975840143 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_000012_260 0.0984410677 - - Far upstream element-binding 2 [Gossypium arboreum]
19 Hb_000556_170 0.0986187892 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
20 Hb_011618_090 0.09940828 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000363_400 Hb_000363_400 Hb_000352_260 Hb_000352_260 Hb_000363_400--Hb_000352_260 Hb_000922_360 Hb_000922_360 Hb_000363_400--Hb_000922_360 Hb_005288_010 Hb_005288_010 Hb_000363_400--Hb_005288_010 Hb_005389_160 Hb_005389_160 Hb_000363_400--Hb_005389_160 Hb_008160_030 Hb_008160_030 Hb_000363_400--Hb_008160_030 Hb_010381_030 Hb_010381_030 Hb_000363_400--Hb_010381_030 Hb_000352_260--Hb_008160_030 Hb_010417_070 Hb_010417_070 Hb_000352_260--Hb_010417_070 Hb_000823_030 Hb_000823_030 Hb_000352_260--Hb_000823_030 Hb_009083_070 Hb_009083_070 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010 Hb_003464_090 Hb_003464_090 Hb_000922_360--Hb_003464_090 Hb_011618_090 Hb_011618_090 Hb_000922_360--Hb_011618_090 Hb_000011_100 Hb_000011_100 Hb_000922_360--Hb_000011_100 Hb_003370_030 Hb_003370_030 Hb_000922_360--Hb_003370_030 Hb_001006_330 Hb_001006_330 Hb_000922_360--Hb_001006_330 Hb_001430_080 Hb_001430_080 Hb_000922_360--Hb_001430_080 Hb_009767_100 Hb_009767_100 Hb_005288_010--Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_005288_010--Hb_001005_190 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_003055_060 Hb_003055_060 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_008160_030--Hb_009083_070 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080 Hb_005207_050 Hb_005207_050 Hb_010381_030--Hb_005207_050 Hb_003175_030 Hb_003175_030 Hb_010381_030--Hb_003175_030 Hb_006922_010 Hb_006922_010 Hb_010381_030--Hb_006922_010 Hb_010381_030--Hb_005389_160 Hb_033772_030 Hb_033772_030 Hb_010381_030--Hb_033772_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6064 24.663 13.541 8.7335 12.0782 8.85344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33252 10.1222 12.2797 18.74 7.59188

CAGE analysis