Hb_003175_030

Information

Type -
Description -
Location Contig3175: 24566-28131
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01620g
description POPTRDRAFT_568093; phosphatase-like protein Psc923
nr
ID XP_011002563.1
description PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
swissprot
ID Q8RWU7
description Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana GN=PUX4 PE=1 SV=1
trembl
ID B9HZB4
description Phosphatase-like protein Psc923 OS=Populus trichocarpa GN=POPTR_0011s01620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33439: 24719-27955 , PASA_asmbl_33440: 25699-25964 , PASA_asmbl_33442: 29005-33754
cDNA
(Sanger)
(ID:Location)		 009_M18.ab1: 25108-27955 , 041_D21.ab1: 26082-27955

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_030 0.0 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
2 Hb_010381_030 0.0729547787 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
3 Hb_000886_050 0.0738396368 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
4 Hb_005389_160 0.079684442 - - PREDICTED: casein kinase I [Jatropha curcas]
5 Hb_002078_220 0.0833516806 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_003752_100 0.084771981 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
7 Hb_003398_080 0.090107052 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
8 Hb_012055_060 0.0911244671 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
9 Hb_001205_200 0.0925281856 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005015_080 0.093028429 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
11 Hb_001864_060 0.0932893457 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
12 Hb_005306_190 0.0948232854 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
13 Hb_008511_090 0.0957463724 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
14 Hb_000442_010 0.0957821417 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
15 Hb_000373_100 0.0977666584 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
16 Hb_000236_410 0.0987222107 - - Paramyosin, putative [Ricinus communis]
17 Hb_000861_080 0.099171944 - - PREDICTED: protein ELC-like [Jatropha curcas]
18 Hb_155396_010 0.099545072 - - TMV resistance protein N, putative [Ricinus communis]
19 Hb_028962_020 0.099846044 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
20 Hb_004143_100 0.0999698559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003175_030 Hb_003175_030 Hb_010381_030 Hb_010381_030 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003752_100 Hb_003752_100 Hb_003175_030--Hb_003752_100 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080 Hb_005207_050 Hb_005207_050 Hb_010381_030--Hb_005207_050 Hb_006922_010 Hb_006922_010 Hb_010381_030--Hb_006922_010 Hb_010381_030--Hb_005389_160 Hb_033772_030 Hb_033772_030 Hb_010381_030--Hb_033772_030 Hb_000363_400 Hb_000363_400 Hb_010381_030--Hb_000363_400 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_010417_070 Hb_010417_070 Hb_005389_160--Hb_010417_070 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_005389_160--Hb_003398_080 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.62 108.522 39.9975 49.89 37.8056 37.1166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.1146 44.5995 39.4054 40.2812 23.7633

CAGE analysis