Hb_005207_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig5207: 31434-34260
Sequence    

Annotation

kegg
ID rcu:RCOM_0221060
description hypothetical protein
nr
ID XP_012078744.1
description PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
swissprot
ID Q9LT81
description Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1
trembl
ID A0A067KBJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13298 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46684: 31527-32051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005207_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
2 Hb_010381_030 0.0705495921 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
3 Hb_009627_030 0.0819630744 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
4 Hb_006922_010 0.0823656479 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
5 Hb_002900_090 0.0880493228 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
6 Hb_000484_130 0.0916402476 - - splicing factor, putative [Ricinus communis]
7 Hb_033772_030 0.0927316782 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
8 Hb_005306_190 0.0950372957 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
9 Hb_000649_110 0.0954073621 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
10 Hb_022256_020 0.1019380672 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
11 Hb_012239_020 0.1023049997 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
12 Hb_008770_030 0.1032888667 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
13 Hb_012762_030 0.1042180637 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
14 Hb_000331_670 0.1053082449 - - PREDICTED: protein tipD [Jatropha curcas]
15 Hb_001104_170 0.1055158418 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
16 Hb_004916_010 0.1064282808 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
17 Hb_024621_040 0.1072871345 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
18 Hb_005000_260 0.1086874607 - - recA family protein [Populus trichocarpa]
19 Hb_003175_030 0.1090392524 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
20 Hb_007163_120 0.1091927302 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_005207_050 Hb_005207_050 Hb_010381_030 Hb_010381_030 Hb_005207_050--Hb_010381_030 Hb_009627_030 Hb_009627_030 Hb_005207_050--Hb_009627_030 Hb_006922_010 Hb_006922_010 Hb_005207_050--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_005207_050--Hb_002900_090 Hb_000484_130 Hb_000484_130 Hb_005207_050--Hb_000484_130 Hb_033772_030 Hb_033772_030 Hb_005207_050--Hb_033772_030 Hb_003175_030 Hb_003175_030 Hb_010381_030--Hb_003175_030 Hb_010381_030--Hb_006922_010 Hb_005389_160 Hb_005389_160 Hb_010381_030--Hb_005389_160 Hb_010381_030--Hb_033772_030 Hb_000363_400 Hb_000363_400 Hb_010381_030--Hb_000363_400 Hb_009627_030--Hb_006922_010 Hb_003906_200 Hb_003906_200 Hb_009627_030--Hb_003906_200 Hb_007017_040 Hb_007017_040 Hb_009627_030--Hb_007017_040 Hb_009627_030--Hb_010381_030 Hb_001205_200 Hb_001205_200 Hb_009627_030--Hb_001205_200 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_002900_090--Hb_033772_030 Hb_002900_090--Hb_005000_260 Hb_002900_090--Hb_000739_100 Hb_003464_090 Hb_003464_090 Hb_002900_090--Hb_003464_090 Hb_002900_090--Hb_007163_120 Hb_022256_020 Hb_022256_020 Hb_000484_130--Hb_022256_020 Hb_001359_050 Hb_001359_050 Hb_000484_130--Hb_001359_050 Hb_003849_110 Hb_003849_110 Hb_000484_130--Hb_003849_110 Hb_012239_020 Hb_012239_020 Hb_000484_130--Hb_012239_020 Hb_001221_110 Hb_001221_110 Hb_000484_130--Hb_001221_110 Hb_000484_130--Hb_003464_090 Hb_033772_030--Hb_007163_120 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_033772_030--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89737 8.69918 4.60705 4.52818 2.49764 4.29511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26734 6.82234 5.12328 5.18177 2.16663

CAGE analysis